test

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

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Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status.

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

HPC Challenge

HPC Challenge (HPCC) is a cluster-focused benchmark consisting of the HPL Linpack TPP benchmark, DGEMM, STREAM, PTRANS, RandomAccess, FFT, and communication bandwidth and latency. This HPC Challenge test profile attempts to ship with standard yet versatile configuration/input files though they can be modified. Learn more via the OpenBenchmarking.org test page.

Test / Class: G-HPL

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: cat: hpccoutf.txt: No such file or directory

Test / Class: G-Ffte

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Test / Class: EP-DGEMM

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Test / Class: G-Ptrans

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Test / Class: EP-STREAM Triad

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Test / Class: G-Random Access

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Test / Class: Random Ring Latency

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Test / Class: Random Ring Bandwidth

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Test / Class: Max Ping Pong Bandwidth

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GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

Implementation: MPI CPU - Input: water_GMX50_bare

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Implementation: NVIDIA CUDA GPU - Input: water_GMX50_bare

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: /cuda-build/run-gromacs: line 3: /cuda-build/bin/gmx: No such file or directory

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

Model: 20k Atoms

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Model: Rhodopsin Protein

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High Performance Conjugate Gradient

HPCG is the High Performance Conjugate Gradient and is a new scientific benchmark from Sandia National Lans focused for super-computer testing with modern real-world workloads compared to HPCC. Learn more via the OpenBenchmarking.org test page.

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: cat: HPCG-Benchmark*.txt: No such file or directory

NAS Parallel Benchmarks

NPB, NAS Parallel Benchmarks, is a benchmark developed by NASA for high-end computer systems. This test profile currently uses the MPI version of NPB. This test profile offers selecting the different NPB tests/problems and varying problem sizes. Learn more via the OpenBenchmarking.org test page.

Test / Class: BT.C

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Test / Class: CG.C

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Test / Class: EP.C

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Test / Class: EP.D

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Test / Class: FT.C

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Test / Class: IS.D

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Test / Class: LU.C

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Test / Class: MG.C

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Test / Class: SP.B

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Test / Class: SP.C

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ASKAP

ASKAP is a set of benchmarks from the Australian SKA Pathfinder. The principal ASKAP benchmarks are the Hogbom Clean Benchmark (tHogbomClean) and Convolutional Resamping Benchmark (tConvolve) as well as some previous ASKAP benchmarks being included as well for OpenCL and CUDA execution of tConvolve. Learn more via the OpenBenchmarking.org test page.

Test: tConvolve MPI

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Intel MPI Benchmarks

Intel MPI Benchmarks for stressing MPI implementations. At this point the test profile aggregates results for some common MPI functionality. Learn more via the OpenBenchmarking.org test page.

Test: IMB-P2P PingPong

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Test: IMB-MPI1 Exchange

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Test: IMB-MPI1 PingPong

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Test: IMB-MPI1 Sendrecv

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Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

Test: sedovbig

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Test: leblancbig

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Monte Carlo Simulations of Ionised Nebulae

Mocassin is the Monte Carlo Simulations of Ionised Nebulae. MOCASSIN is a fully 3D or 2D photoionisation and dust radiative transfer code which employs a Monte Carlo approach to the transfer of radiation through media of arbitrary geometry and density distribution. Learn more via the OpenBenchmarking.org test page.

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QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

Input: simple-H2O

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miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

Problem Size: Small

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: ./miniFE.x: symbol lookup error: /usr/lib64/openmpi/lib/libmpi_cxx.so.1: undefined symbol: ompi_mpi_char

Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

Input: X3D-benchmarking input.i3d

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Input: input.i3d 129 Cells Per Direction

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Input: input.i3d 193 Cells Per Direction

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GPAW

GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). Learn more via the OpenBenchmarking.org test page.

Input: Carbon Nanotube

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Open FMM Nero2D

This is a test of Nero2D, which is a two-dimensional TM/TE solver for Open FMM. Open FMM is a free collection of electromagnetic software for scattering at very large objects. This test profile times how long it takes to solve one of the included 2D examples. Learn more via the OpenBenchmarking.org test page.

Intel Core i7-6700T: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: ./nero2d_/bin/nero2d: symbol lookup error: /usr/lib64/openmpi/lib/libmpi_cxx.so.1: undefined symbol: ompi_mpi_char