Timed HMMer Search
This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein.
Learn more about this test at the upstream project site: http://hmmer.org/.
This scientific test profile is maintained by Andrew Schofield. This OpenBenchmarking.org test profile was created on 6 December 2010 and last updated on 27 September 2020. To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark hmmer.
This test has an average install time of 10 seconds and an average run-time of 33 seconds.
* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting.
Revision History
pts/hmmer-1.2.0 [View Source] 27 Sep 2020 13:46 EDT
Update against HMMer 3.3.1 upstream, other install/build improvements.
pts/hmmer-1.1.2 [View Source] 09 Sep 2017 11:45 EDT
Update download links
pts/hmmer-1.1.1 [View Source] 25 Aug 2016 14:16 EDT
Update download links
pts/hmmer-1.1.0 [View Source] 06 Dec 2010 14:53 EST
Initial import into OpenBenchmarking.org
Suites Using This Test
Performance Metrics
Analyze Test Configuration:Timed HMMer Search 3.3.1
Pfam Database Search
OpenBenchmarking.org metrics for this test profile configuration based on 267 public samples since 27 September 2020 with the latest data as of 29 October 2020.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (Timed HMMer Search 3.3.1 - Pfam Database Search) has an average run-time of 8 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
Recent Test Results
Compare
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2 Systems - 520 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 20.10 - 5.8.0-26-generic - GNOME Shell 3.38.1 |
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4 Systems - 99 Benchmark Results |
Intel Core i7-1165G7 - Dell 0GG9PT - Intel Device a0ef Ubuntu 20.04 - 5.9.0-050900daily20201016-generic - GNOME Shell 3.36.4 |
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3 Systems - 536 Benchmark Results |
Intel Core i7-9700TE - C OZE GM-1000 v0.0.01.001 - Intel Cannon Lake PCH Ubuntu 20.10 - 5.8.0-25-generic - GNOME Shell 3.38.1 |
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1 System - 43 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 19.10 - 5.3.0-64-generic - GNOME Shell 3.34.1 |
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1 System - 5 Benchmark Results |
Intel Core i9-9980XE - HP 81C5 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.04 - 5.4.0-48-generic - GNOME Shell 3.36.4 |
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1 System - 43 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 19.10 - 5.3.0-64-generic - GNOME Shell 3.34.1 |
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Featured Kernel Comparison |
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1 System - 43 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 19.10 - 5.3.0-64-generic - GNOME Shell 3.34.1 |
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1 System - 295 Benchmark Results |
AMD Ryzen Threadripper 3990X 64-Core - System76 Thelio Major - AMD Starship Pop 20.04 - 5.4.0-7642-generic - GNOME Shell 3.36.4 |
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1 System - 44 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 19.10 - 5.3.0-64-generic - GNOME Shell 3.34.1 |
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3 Systems - 197 Benchmark Results |
AMD Ryzen 3 1300X - ASRock AB350 Pro4 - AMD 17h Ubuntu 20.04 - 5.4.0-51-generic - GNOME Shell 3.36.3 |
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1 System - 44 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 19.10 - 5.3.0-64-generic - GNOME Shell 3.34.1 |
Most Popular Test Results
Compare
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3 Systems - 268 Benchmark Results |
Intel Core i5-2520M - HP 161C - Intel 2nd Generation Core DRAM Ubuntu 18.04 - 4.18.0-20-generic - GNOME Shell 3.28.3 |
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2 Systems - 403 Benchmark Results |
Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Ubuntu 20.10 - 5.8.0-22-generic - GNOME Shell 3.38.0 |
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3 Systems - 406 Benchmark Results |
AMD Ryzen 9 3900XT 12-Core - MSI MEG X570 GODLIKE - AMD Starship Ubuntu 20.10 - 5.8.0-20-generic - GNOME Shell 3.38.0 |
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3 Systems - 31 Benchmark Results |
AMD Ryzen 5 3600XT 6-Core - MSI X470 GAMING M7 AC - AMD Starship Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.4 |
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3 Systems - 131 Benchmark Results |
Intel Core i5-10600K - ASUS PRIME Z490M-PLUS - Intel Comet Lake PCH Ubuntu 20.04 - 5.4.0-45-generic - GNOME Shell 3.36.4 |
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3 Systems - 202 Benchmark Results |
Intel Core i7-7700K - MSI Z270-A PRO - Intel Xeon E3-1200 v6 Ubuntu 20.04 - 5.4.0-28-generic - GNOME Shell 3.36.1 |
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Featured Processor Comparison |
Intel Xeon Silver 4216 - Supermicro X11SPL-F v1.02 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.10 - 5.8.0-20-generic - GNOME Shell 3.38.0 |
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3 Systems - 32 Benchmark Results |
AMD Ryzen 9 3900X 12-Core - ASUS TUF GAMING X570-PLUS - AMD Starship Ubuntu 20.04 - 5.9.0-050900rc6daily20200922-generic - GNOME Shell 3.36.4 |
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3 Systems - 25 Benchmark Results |
AMD Ryzen 7 1800X Eight-Core - MSI X370 XPOWER GAMING TITANIUM - AMD 17h Debian 10 - 4.19.0-11-amd64 - X Server 1.20.4 |
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3 Systems - 41 Benchmark Results |
Intel Xeon E3-1231 v3 - Gigabyte H81M-S1 - Intel Xeon E3-1200 v3 DRAM Debian 10 - 4.19.0-11-amd64 - X Server 1.20.4 |
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3 Systems - 171 Benchmark Results |
Intel Xeon E3-1270 v5 - ASUS E3 PRO GAMING V5 - Intel Xeon E3-1200 v5 Clear Linux OS 31470 - 5.3.8-854.native - GNOME Shell 3.34.1 |
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3 Systems - 68 Benchmark Results |
Intel Core i5-2500K - SAPPHIRE Pure Black P67 Hydra - Intel 2nd Generation Core DRAM Ubuntu 20.04 - 5.4.0-40-generic - GNOME Shell 3.36.4 |
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