This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein.
To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark hmmer.
OpenBenchmarking.org metrics for this test profile configuration based on 1,124 public results since 27 September 2020 with the latest data as of 9 April 2021.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (Timed HMMer Search 3.3.1 - Pfam Database Search) has an average run-time of 7 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.
Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.
This test profile binary relies on the shared libraries libm.so.6, libpthread.so.0, libc.so.6.
1 System - 4 Benchmark Results |
AMD Ryzen Threadripper 3970X 32-Core - ASRock TRX40 Creator - AMD Starship Debian 10 - 4.19.0-16-amd64 - GNOME Shell 3.30.2 |
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1 System - 1 Benchmark Result |
AMD Ryzen 5 4500U - RO Kona_RN - AMD Renoir Root Complex ManjaroLinux 21.0.1 - 5.11.6-1-MANJARO - Xfce 4.16 |
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1 System - 105 Benchmark Results |
Intel Core - Red Hat RHEL-AV - Intel 82G33 Debian 9.12 - 4.9.0-12-amd64 - GCC 6.3.0 20170516 |
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Featured Disk Comparison |
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5 Systems - 67 Benchmark Results |
Intel Celeron G5900 - Gigabyte B460M DS3H - Intel Device 9b73 Debian 10 - 4.19.0-9-amd64 - X Server 1.20.4 |
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3 Systems - 21 Benchmark Results |
AMD Ryzen 9 5900X 12-Core - MSI B550M PRO-VDH WIFI - AMD Device 1480 Ubuntu 18.04 - 5.4.0-70-generic - LXDE 0.9.3 |
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2 Systems - 21 Benchmark Results |
AMD Phenom II X4 945 - Gigabyte GA-MA78GM-S2H - 6144MB Calculate Linux Desktop 11.15 GNOME - 3.3.3-calculate - GNOME Shell 3.2.2.1 |
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9 Systems - 442 Benchmark Results |
AMD Ryzen 5 5600X 6-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Ubuntu 21.04 - 5.12.0-051200rc3daily20210315-generic - GNOME Shell 3.38.3 |
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1 System - 272 Benchmark Results |
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1 System - 272 Benchmark Results
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1 System - 1 Benchmark Result
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2 x Intel Xeon Gold 6330 - Supermicro X12DPi-N6 v1.00 - Intel Device 0998 CentOS Linux 8 - 4.18.0-80.el8.x86_64 - GCC 8.3.1 20191121
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1 System - 1 Benchmark Result
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Intel Core i7-10750H - Dell 0MDFDR - Intel Comet Lake PCH Arch rolling - 5.11.11-arch1-1 - X Server 1.20.10 |
3 Systems - 268 Benchmark Results |
Intel Core i5-2520M - HP 161C - Intel 2nd Generation Core DRAM Ubuntu 18.04 - 4.18.0-20-generic - GNOME Shell 3.28.3 |
4 Systems - 99 Benchmark Results |
AMD Ryzen 5 4500U - LENOVO LNVNB161216 - AMD Renoir Root Complex Ubuntu 20.10 - 5.9.1-050901-generic - GNOME Shell 3.38.1 |
8 Systems - 84 Benchmark Results |
Intel Xeon E-2288G - Compulab SBC-ATCFL v1.2 - Intel Cannon Lake PCH Ubuntu 20.10 - 5.8.0-26-generic - GNOME Shell 3.38.1 |
2 Systems - 151 Benchmark Results |
Intel Xeon E-2278GEL - Logic Supply RXM-181 - Intel Cannon Lake PCH Ubuntu 20.10 - 5.8.0-41-generic - GNOME Shell 3.38.2 |
Featured Graphics Comparison |
AMD Ryzen 7 5800X 8-Core - ASRock X570 Pro4 - AMD Starship Ubuntu 20.10 - 5.12.0-rc5-nopsf - GNOME Shell 3.38.1 |
3 Systems - 46 Benchmark Results |
AMD Ryzen Threadripper 3960X 24-Core - MSI Creator TRX40 - AMD Starship Ubuntu 20.04 - 5.9.0-rc5-14sep-patch - GNOME Shell 3.36.4 |
3 Systems - 40 Benchmark Results |
2 x Intel Xeon Gold 5220R - TYAN S7106 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.04 - 5.9.0-050900rc6-generic - GNOME Shell 3.36.4 |
2 Systems - 403 Benchmark Results |
Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Ubuntu 20.04 - 5.4.0-48-generic - GNOME Shell 3.36.4 |
3 Systems - 406 Benchmark Results |
Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Ubuntu 20.04 - 5.4.0-48-generic - GNOME Shell 3.36.4 |
5 Systems - 99 Benchmark Results |
Intel Core i7-1165G7 - Dell 0GG9PT - Intel Tiger Lake-LP Ubuntu 20.10 - 5.9.2-050902-generic - GNOME Shell 3.38.1 |
3 Systems - 131 Benchmark Results |
Intel Core i5-10600K - ASUS PRIME Z490M-PLUS - Intel Comet Lake PCH Ubuntu 20.04 - 5.9.0-050900daily20201012-generic - GNOME Shell 3.36.4 |
3 Systems - 31 Benchmark Results |
AMD Ryzen 5 3600XT 6-Core - MSI X470 GAMING M7 AC - AMD Starship Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.4 |