Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark mrbayes.

Project Site

github.com

Test Created

6 December 2010

Last Updated

11 October 2019

Test Maintainer

Andrew Schofield

Test Type

Processor

Average Install Time

1 Minute, 35 Seconds

Average Run Time

2 Minutes, 5 Seconds

Accolades

150k+ Downloads

Supported Platforms


Public Result UploadsTest Completions*Reported Installs*OpenBenchmarking.orgEventsTimed MrBayes Analysis Popularity Statisticspts/mrbayes2011.012011.052011.092012.012012.052012.092013.012013.052013.092014.012014.052014.092015.012015.052015.092016.012016.052016.092017.012017.052017.092018.012018.052018.092019.012019.052019.092020.012020.052020.092021.014K8K12K16K20K
* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
Data current as of Fri, 22 Jan 2021 20:05:42 GMT.

Revision History

pts/mrbayes-1.4.0   [View Source]   Fri, 11 Oct 2019 11:45:36 GMT
Update against upstream, add Windows support.

pts/mrbayes-1.3.2   [View Source]   Sun, 26 Aug 2018 17:06:48 GMT
Update download links.

pts/mrbayes-1.3.1   [View Source]   Wed, 07 Feb 2018 13:41:43 GMT
Use built-in mpich/mpi, add SHA256 for download file.

pts/mrbayes-1.3.0   [View Source]   Sat, 09 Sep 2017 14:07:59 GMT
Fix for higher core count CPUs

pts/mrbayes-1.2.0   [View Source]   Mon, 06 Dec 2010 14:57:53 GMT
Initial import into OpenBenchmarking.org

Suites Using This Test

C/C++ Compiler Tests

CPU Massive

Scientific Computing

MPI Benchmarks

Bioinformatics

HPC - High Performance Computing


Performance Metrics

Analyze Test Configuration:

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

OpenBenchmarking.org metrics for this test profile configuration based on 1,011 public results since 11 October 2019 with the latest data as of 21 January 2021.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Matching Public Results
Seconds (Average)
95th
22
64 +/- 1
81st
10
74 +/- 2
79th
4
79 +/- 1
78th
4
81 +/- 17
Mid-Tier
75th
> 84
75th
3
84 +/- 20
73rd
4
87 +/- 2
70th
3
90 +/- 13
69th
10
91 +/- 13
69th
3
91 +/- 20
61st
9
100 +/- 14
57th
23
103 +/- 2
57th
10
103 +/- 19
54th
4
106 +/- 1
Median
50th
109
50th
20
109 +/- 5
48th
11
110 +/- 21
45th
16
112 +/- 6
44th
13
113 +/- 4
44th
4
114 +/- 22
41st
5
118 +/- 16
40th
7
121 +/- 11
39th
8
123 +/- 18
35th
4
130 +/- 22
Low-Tier
25th
> 144
25th
18
146 +/- 24
24th
5
147 +/- 15
24th
3
149 +/- 20
23rd
7
150 +/- 4
22nd
5
156 +/- 15
21st
3
165 +/- 34
14th
9
216 +/- 39
12th
4
243 +/- 35
12th
4
246 +/- 41
9th
7
314 +/- 74
OpenBenchmarking.orgDistribution Of Public Results - Primate Phylogeny Analysis1011 Results Range From 45 To 18923 Seconds454238011179155719352313269130693447382542034581495953375715609364716849722776057983836187399117949598731025110629110071138511763121411251912897132751365314031144091478715165155431592116299166771705517433178111818918567189452004006008001000

Based on OpenBenchmarking.org data, the selected test / test configuration (Timed MrBayes Analysis 3.2.7 - Primate Phylogeny Analysis) has an average run-time of 9 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkPrimate Phylogeny AnalysisRun-Time306090120150Min: 2 / Avg: 8.92 / Max: 136

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.5%.

OpenBenchmarking.orgPercent, Fewer Is BetterAverage Deviation Between RunsPrimate Phylogeny AnalysisDeviation3691215Min: 0 / Avg: 0.45 / Max: 12

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