Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark mrbayes.

Project Site

github.com

Test Created

6 December 2010

Last Updated

5 May 2021

Test Maintainer

Andrew Schofield

Test Type

Processor

Average Install Time

1 Minute, 56 Seconds

Average Run Time

24 Minutes, 20 Seconds

Test Dependencies

C/C++ Compiler Toolchain + OpenMPI

Accolades

150k+ Downloads

Supported Platforms

* Uploading of benchmark result data to OpenBenchmarking.org is always optional (opt-in) via the Phoronix Test Suite for users wishing to share their results publicly.
** Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
*** Test profile page view reporting began March 2021.
Data current as of 22 September 2021.

Revision History

pts/mrbayes-1.5.0 [View Source] Wed, 05 May 2021 14:34:45 GMT
Increase ngen size.

pts/mrbayes-1.4.0 [View Source] Fri, 11 Oct 2019 11:45:36 GMT
Update against upstream, add Windows support.

pts/mrbayes-1.3.2 [View Source] Sun, 26 Aug 2018 17:06:48 GMT
Update download links.

pts/mrbayes-1.3.1 [View Source] Wed, 07 Feb 2018 13:41:43 GMT
Use built-in mpich/mpi, add SHA256 for download file.

pts/mrbayes-1.3.0 [View Source] Sat, 09 Sep 2017 14:07:59 GMT
Fix for higher core count CPUs

pts/mrbayes-1.2.0 [View Source] Mon, 06 Dec 2010 14:57:53 GMT
Initial import into OpenBenchmarking.org

Suites Using This Test

C/C++ Compiler Tests

CPU Massive

Scientific Computing

HPC - High Performance Computing

MPI Benchmarks

Bioinformatics

Performance Metrics

Analyze Test Configuration:

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

OpenBenchmarking.org metrics for this test profile configuration based on 360 public results since 5 May 2021 with the latest data as of 10 September 2021.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component

Percentile Rank

# Compatible Public Results

Seconds (Average)

Intel Core i9-11900K

98th

82 ^{+/- 10}

AMD Ryzen 5 5600X 6-Core

94th

AMD Ryzen 9 5900X 12-Core

92nd

AMD Ryzen 7 5800X 8-Core

89th

AMD Ryzen 9 5950X 16-Core

85th

94 ^{+/- 2}

Intel Core i9-10900K

83rd

AMD Ryzen 9 3950X 16-Core

80th

105

AMD Ryzen 5 3600XT 6-Core

80th

105

Intel Core i5-10600K

80th

105 ^{+/- 1}

AMD Ryzen 9 3900XT 12-Core

77th

107 ^{+/- 1}

AMD Ryzen 7 3700X 8-Core

77th

107 ^{+/- 1}

AMD Ryzen Threadripper 3970X 32-Core

76th

109

Mid-Tier

75th

> 112

Intel Core i9-9900KS

74th

112 ^{+/- 1}

AMD Ryzen 9 3900X 12-Core

74th

112

Intel Core i7-7700K

74th

115 ^{+/- 1}

Intel Core i3-10100

74th

115

Intel Core i7-8086K

70th

120

Intel Core i7-8700K

69th

121

Intel Core i5-7600K

66th

130

Intel Xeon E3-1275 v6

66th

130

AMD Ryzen 5 3400G

65th

131 ^{+/- 3}

Intel Core i7-7740K

65th

131

AMD Ryzen 7 3800XT 8-Core

65th

133

AMD Ryzen 5 4500U

64th

136 ^{+/- 5}

Intel Core i5-8400

63rd

137

Intel Core i3-7100

63rd

137 ^{+/- 6}

Intel Xeon E3-1280 v5

57th

141 ^{+/- 1}

2 x AMD EPYC 7763 64-Core

56th

142 ^{+/- 1}

AMD Ryzen 5 2400G

54th

143 ^{+/- 8}

AMD Ryzen 3 1300X

53rd

144 ^{+/- 2}

Intel Core i3-8100

53rd

144

Intel Xeon E-2288G

53rd

144

Median

50th

145

Intel Xeon E3-1245 v5

50th

145

AMD Ryzen 7 4700U

48th

151 ^{+/- 2}

AMD Ryzen Threadripper 3990X 64-Core

48th

152 ^{+/- 3}

Intel Core i7-1165G7

46th

154 ^{+/- 2}

Intel Xeon E3-1270 v5

42nd

156 ^{+/- 1}

AMD Ryzen 7 2700 Eight-Core

42nd

157 ^{+/- 4}

Intel Core i5-6500

40th

158 ^{+/- 1}

AMD Ryzen Threadripper 2990WX 32-Core

40th

159 ^{+/- 1}

Intel Core i9-10980XE

39th

160 ^{+/- 16}

Intel Xeon E3-1260L v5

38th

167 ^{+/- 1}

AMD Ryzen Threadripper 2970WX 24-Core

36th

172 ^{+/- 1}

Intel Core i3-4130

35th

173 ^{+/- 1}

2 x Intel Xeon Platinum 8380

33rd

176 ^{+/- 21}

Intel Core i7-6800K

33rd

176 ^{+/- 4}

AMD Ryzen 7 1700 Eight-Core

32nd

177 ^{+/- 12}

AMD Ryzen Threadripper 2950X 16-Core

32nd

177 ^{+/- 1}

Intel Core i9-7980XE

30th

178 ^{+/- 1}

AMD Ryzen 3 3200U

28th

179 ^{+/- 1}

Intel Core i7-9750H

28th

179 ^{+/- 3}

Low-Tier

25th

> 184

Intel Core i7-4770K

25th

184 ^{+/- 2}

Intel Xeon E5-2687W v3

24th

186 ^{+/- 2}

Intel Core i7-8550U

23rd

189 ^{+/- 5}

Intel Xeon E3-1235L v5

21st

192 ^{+/- 1}

2 x Intel Xeon Platinum 8280

21st

192 ^{+/- 2}

Intel Core i7-10700T

21st

192

Intel Xeon E3-1231 v3

18th

194

Intel Xeon Gold 6226R

17th

196 ^{+/- 6}

Intel Core i7-8565U

16th

202 ^{+/- 10}

Intel Core i7-1065G7

16th

205 ^{+/- 6}

2 x AMD EPYC 7601 32-Core

14th

209 ^{+/- 4}

Intel Core i7-4960X

12th

217 ^{+/- 4}

Intel Core i7-3770K

11th

218 ^{+/- 2}

2 x Intel Xeon Gold 5220R

11th

219 ^{+/- 8}

Ampere Altra ARMv8 Neoverse-N1 160-Core

7th

296 ^{+/- 2}

Intel Xeon E5-2609 v4

6th

302 ^{+/- 1}

Intel Core i7-2700K

5th

328 ^{+/- 3}

Intel Xeon Silver 4216

4th

368 ^{+/- 2}

Based on OpenBenchmarking.org data, the selected test / test configuration (Timed MrBayes Analysis 3.2.7 - Primate Phylogeny Analysis) has an average run-time of 8 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.3%.

Does It Scale Well With Increasing Cores?

No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.

Notable Instruction Set Usage

Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.

Instruction Set

Support

Instructions Detected

SSE 4.2 (SSE4_2)

Used by default on supported hardware.
Found on Intel processors since at least 2010.
Found on AMD processors since Bulldozer (2011).

POPCNT

Advanced Vector Extensions (AVX)

Used by default on supported hardware.
Found on Intel processors since Sandy Bridge (2011).
Found on AMD processors since Bulldozer (2011).

VZEROUPPER VEXTRACTF128 VINSERTF128 VBROADCASTSD VBROADCASTSS VPERM2F128 VPERMILPD VBROADCASTF128 VMASKMOVPS

Advanced Vector Extensions 2 (AVX2)

Used by default on supported hardware.
Found on Intel processors since Haswell (2013).
Found on AMD processors since Excavator (2016).

VEXTRACTI128 VPBROADCASTQ VPBROADCASTD VINSERTI128 VPERMQ VPERM2I128 VPERMD VPMASKMOVQ VPMASKMOVD VPERMPD VPGATHERQD VPGATHERDD VPGATHERQQ VGATHERQPD VPBLENDD VGATHERDPD

FMA (FMA)

Used by default on supported hardware.
Found on Intel processors since Haswell (2013).
Found on AMD processors since Bulldozer (2011).

VFMADD132PS VFMADD231PS

The test / benchmark does honor compiler flag changes.

Last automated analysis: 10 May 2021

This test profile binary relies on the shared libraries libm.so.6, libc.so.6.

Ubuntu Linux 4.18 Intel / AMD High-End Desktop Benchmarks 12 Systems - 121 Benchmark Results	Intel Core i7-8700K - ASUS TUF Z370-PLUS GAMING - Intel Device 3ec2 Ubuntu 18.04 - 4.18.0-999-generic - GNOME Shell 3.28.2
Core i9 10900K/9900KS vs. AMD Ryzen 9 3950X/3900X - BENCHMARK 6 Systems - 133 Benchmark Results	AMD Ryzen 9 3950X 16-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Ubuntu 20.04 - 5.4.0-9-generic - GNOME Shell 3.34.3
clearlinux-ryzen3-4350 6 Systems - 254 Benchmark Results	AMD Ryzen 3 PRO 4350G - ASRock B450M Pro4 - AMD Renoir Root Complex Clear Linux OS 34550 - 5.10.32-1035.native - GNOME Shell 40.0
3200g-mrbayes 1 System - 1 Benchmark Result	AMD Ryzen 3 3200G - GALAX A320M DRAGON GENERAL Ver1.0 - AMD Raven Ubuntu 21.10 - 5.13.0-14-generic - GNOME Shell 40.2
W017i3 1 System - 17 Benchmark Results	Intel Core i3-7100 - FUJITSU D3433-S2 - Intel Xeon E3-1200 v6 Ubuntu 21.04 - 5.11.0-25-generic - GCC 10.3.0
benchmark_lenovo_mrbayes 1 System - 1 Benchmark Result	Intel Xeon W3503 - LENOVO - Intel 5520 Arch Linux - 5.12.15-arch1-1 - X Server 1.20.12
benchmark_mrbayes 1 System - 1 Benchmark Result	AMD Ryzen 5 3600 6-Core - ASUS TUF GAMING X570-PLUS - AMD Starship Arch Linux - 5.13.6-arch1-1 - X Server 1.20.13
test1 1 System - 113 Benchmark Results	4 x Intel Xeon E5-4657L v2 - Dell 04K5X5 - Intel Xeon E7 v2 Ubuntu 20.04 - 5.8.0-59-generic - GNOME Shell 3.36.9
y 4 Systems - 51 Benchmark Results	AMD EPYC 7J13 64-Core - (1.4.1 BIOS) - 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16384 + 16128 0MHz Microsoft Windows Server 2019 Standard Build 17763 - 10.0 - 9.25.36.24
pts-total-result 1 System - 179 Benchmark Results	AMD Ryzen Threadripper 1920X 12-Core - Gigabyte X399 AORUS PRO-CF - AMD 17h Ubuntu 20.04 - 5.8.0-63-generic - GNOME Shell 3.36.9
4700U 2021 3 Systems - 253 Benchmark Results	AMD Ryzen 7 4700U - LENOVO LNVNB161216 - AMD Renoir Root Complex Ubuntu 20.04 - 5.9.0-050900rc7daily20201003-generic - GNOME Shell 3.36.9
redhat144 3 Systems - 272 Benchmark Results	4 x Intel Xeon Gold 6254 - HPE ProLiant DL560 Gen10 - Intel Sky Lake-E DMI3 Registers RedHatEnterpriseServer 7.9 - 3.10.0-1160.31.1.el7.x86_64 - GNOME Shell 3.28.3
Jetway 1 System - 17 Benchmark Results	Intel Pentium G2030 - American Megatrends 4.6.5 - Intel Xeon E3-1200 v2 Ubuntu 21.04 - 5.11.0-22-generic - GCC 10.3.0
HWRUN20210713C 1 System - 31 Benchmark Results	ARMv8 Neoverse-N1 - GIGABYTE MP32-AR0-00 v01000100 - Ampere Computing LLC Device e100 Ubuntu 20.04 - 5.4.0-77-generic - GCC 9.3.0
Core i7 1185G7 Windows 1 System - 130 Benchmark Results	Intel Core i7-1185G7 - Dell 0DXP1F - 8 x 2048 MB 4267MHz Microsoft Windows 10 Pro Build 19042 - 10.0 - 27.20.100.9664

Ryzen 9 5950X Clang 12 vs. GCC 11 Benchmarks Featured Compiler Comparison	AMD Ryzen 9 5950X 16-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Fedora 34 - 5.11.20-300.fc34.x86_64 - GNOME Shell 40.1
1235 may 3 Systems - 37 Benchmark Results	Intel Xeon E3-1235L v5 - ASRockRack C236M WS - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.4
1-0600k mat 3 Systems - 37 Benchmark Results	Intel Core i5-10600K - ASUS PRIME Z490M-PLUS - Intel Comet Lake PCH Ubuntu 20.10 - 5.11.0-051100rc2daily20210106-generic - GNOME Shell 3.38.1
3950x may 6 Systems - 36 Benchmark Results	AMD Ryzen 9 3950X 16-Core - ASUS ROG CROSSHAIR VII HERO - AMD Starship Ubuntu 20.04 - 5.9.0-050900rc6daily20200922-generic - GNOME Shell 3.36.4
6500 May 4 Systems - 82 Benchmark Results	Intel Core i5-6500 - Gigabyte Z170M-D3H-CF - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.9.0-050900rc7daily20200929-generic - GNOME Shell 3.36.4
7100 june 3 Systems - 117 Benchmark Results	Intel Core i3-7100 - Gigabyte B250M-DS3H-CF - Intel Xeon E3-1200 v6 Ubuntu 20.10 - 5.8.0-48-generic - GNOME Shell 3.38.1
4770k haswell 2021 may 3 Systems - 178 Benchmark Results	Intel Core i7-4770K - Gigabyte Z97-HD3 - Intel 4th Gen Core DRAM Ubuntu 20.10 - 5.8.0-43-generic - GNOME Shell 3.38.1
1275 june 4 Systems - 172 Benchmark Results	Intel Xeon E3-1275 v6 - ASUS P10S-M WS - Intel Xeon E3-1200 v6 Ubuntu 20.04 - 5.9.0-050900rc8daily20201007-generic - X Server 1.20.8
onerun-surplus 10 Systems - 59 Benchmark Results	2 x AMD EPYC 7763 64-Core - AMD DAYTONA_X - AMD Starship Ubuntu 20.04 - 5.11.6-051106-generic - GNOME Shell 3.36.4
1280 june 3 Systems - 136 Benchmark Results	Intel Xeon E3-1280 v5 - MSI Z170A SLI PLUS - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.9.0-050900rc2daily20200826-generic - GNOME Shell 3.36.4
gold may 2 Systems - 38 Benchmark Results	Intel Xeon Gold 6226R - Supermicro X11SPL-F v1.02 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.10 - 5.11.0-rc4-max-boost-inv-patch - GNOME Shell 3.38.1
tr 2970wx may 4 Systems - 11 Benchmark Results	AMD Ryzen Threadripper 2970WX 24-Core - Gigabyte X399 AORUS Gaming 7 - AMD 17h Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.4
xeon broadwell may 2021 3 Systems - 164 Benchmark Results	Intel Xeon E5-2609 v4 - MSI X99A RAIDER - Intel Xeon E7 v4 Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.2
3700X Mayt 3 Systems - 78 Benchmark Results	AMD Ryzen 7 3700X 8-Core - Gigabyte A320M-S2H-CF - AMD Starship Ubuntu 20.04 - 5.8.1-050801-generic - GNOME Shell 3.36.4
10900k may 5 Systems - 32 Benchmark Results	Intel Core i9-10900K - Gigabyte Z490 AORUS MASTER - Intel Comet Lake PCH Ubuntu 20.04 - 5.9.0-050900daily20201012-generic - GNOME Shell 3.36.4

Timed MrBayes Analysis

Project Site

Test Created

Last Updated

Test Maintainer

Test Type

Average Install Time

Average Run Time

Test Dependencies

Accolades

Supported Platforms

Revision History

Suites Using This Test

Performance Metrics

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

Does It Scale Well With Increasing Cores?

Notable Instruction Set Usage

Recent Test Results

Most Popular Test Results