Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark mrbayes.

Project Site

github.com

Test Created

6 December 2010

Last Updated

11 October 2019

Test Maintainer

Andrew Schofield

Test Type

Processor

Average Install Time

1 Minute, 35 Seconds

Average Run Time

2 Minutes, 5 Seconds

Accolades

150k+ Downloads

Supported Platforms

Public Result UploadsTest Completions*Reported Installs*OpenBenchmarking.orgEventsTimed MrBayes Analysis Popularity Statisticspts/mrbayes2011.012011.052011.092012.012012.052012.092013.012013.052013.092014.012014.052014.092015.012015.052015.092016.012016.052016.092017.012017.052017.092018.012018.052018.092019.012019.052019.092020.012020.052020.092021.014K8K12K16K20K
* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
Data current as of Fri, 22 Jan 2021 20:05:42 GMT.

Revision History

pts/mrbayes-1.4.0   [View Source]   Fri, 11 Oct 2019 11:45:36 GMT
Update against upstream, add Windows support.

pts/mrbayes-1.3.2   [View Source]   Sun, 26 Aug 2018 17:06:48 GMT
Update download links.

pts/mrbayes-1.3.1   [View Source]   Wed, 07 Feb 2018 13:41:43 GMT
Use built-in mpich/mpi, add SHA256 for download file.

pts/mrbayes-1.3.0   [View Source]   Sat, 09 Sep 2017 14:07:59 GMT
Fix for higher core count CPUs

pts/mrbayes-1.2.0   [View Source]   Mon, 06 Dec 2010 14:57:53 GMT
Initial import into OpenBenchmarking.org

Suites Using This Test

C/C++ Compiler Tests

CPU Massive

Scientific Computing

MPI Benchmarks

Bioinformatics

HPC - High Performance Computing


Performance Metrics

Analyze Test Configuration:

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

OpenBenchmarking.org metrics for this test profile configuration based on 1,011 public results since 11 October 2019 with the latest data as of 21 January 2021.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Matching Public Results
Seconds (Average)
AMD Ryzen 5 5600X 6-Core
100th
8
55
AMD Ryzen 9 5900X 12-Core
99th
17
57 +/- 1
AMD Ryzen 7 5800X 8-Core
99th
6
57 +/- 2
Intel Core i9-10900K
95th
22
64 +/- 1
AMD Ryzen 9 5950X 16-Core
94th
25
66 +/- 9
AMD Ryzen 7 3800XT 8-Core
93rd
4
67
AMD Ryzen 7 3800X 8-Core
92nd
3
68 +/- 1
Intel Core i5-10600K
91st
9
69
AMD Ryzen 9 3950X 16-Core
89th
19
70 +/- 1
AMD Ryzen 9 3900XT 12-Core
89th
5
70
AMD Ryzen 9 3900X 12-Core
86th
20
72 +/- 2
AMD Ryzen 7 3700X 8-Core
83rd
11
73 +/- 6
Intel Core i9-9900KS
81st
10
74 +/- 2
AMD Ryzen 5 3600X 6-Core
80th
5
75 +/- 14
2 x AMD EPYC 7F52 16-Core
80th
7
78 +/- 13
Intel Core i5-7600K
79th
4
79 +/- 1
2 x AMD EPYC 7F32 8-Core
79th
6
79 +/- 14
AMD EPYC 7F52 16-Core
78th
4
81 +/- 17
AMD EPYC 7262 8-Core
77th
3
82
Mid-Tier
75th
> 84
AMD EPYC 7F32 8-Core
75th
3
84 +/- 20
2 x Intel Xeon Gold 6250
74th
3
86 +/- 6
Intel Core i7-8700B
73rd
4
87 +/- 2
2 x AMD EPYC 7F72 24-Core
72nd
6
88 +/- 14
Intel Core i7-7700
70th
3
90 +/- 13
AMD EPYC 7302P 16-Core
69th
10
91 +/- 13
AMD EPYC 7F72 24-Core
69th
3
91 +/- 20
2 x AMD EPYC 7262 8-Core
68th
9
92 +/- 17
AMD EPYC 7402P 24-Core
67th
8
93 +/- 13
AMD Ryzen 7 2700X Eight-Core
67th
3
93 +/- 5
AMD EPYC 7502 32-Core
66th
6
94 +/- 2
AMD Ryzen Threadripper 3990X 64-Core
64th
15
96 +/- 9
2 x AMD EPYC 7542 32-Core
62nd
5
98 +/- 17
AMD Ryzen Threadripper 2950X 16-Core
61st
4
99 +/- 3
AMD EPYC 7502P 32-Core
61st
9
100 +/- 14
Intel Core i5-9500
60th
3
101
2 x AMD EPYC 7282 16-Core
60th
9
101 +/- 17
AMD EPYC 7642 48-Core
57th
23
103 +/- 2
2 x AMD EPYC 7252 8-Core
57th
10
103 +/- 19
2 x AMD EPYC 7272 12-Core
56th
6
104 +/- 20
2 x AMD EPYC 7402 24-Core
55th
5
105 +/- 21
AMD Ryzen Threadripper 2970WX 24-Core
54th
4
106 +/- 2
AMD EPYC 7742 64-Core
54th
4
106 +/- 1
2 x AMD EPYC 7302 16-Core
52nd
4
107 +/- 23
Median
50th
109
Intel Core i9-7960X
50th
20
109 +/- 5
2 x AMD EPYC 7532 32-Core
50th
8
109 +/- 20
AMD Ryzen Threadripper 2990WX 32-Core
50th
6
109 +/- 3
AMD EPYC 7232P 8-Core
48th
11
110 +/- 21
2 x AMD EPYC 7502 32-Core
47th
6
111 +/- 23
Intel Core i9-10980XE
45th
16
112 +/- 6
AMD Ryzen Threadripper 2920X 12-Core
44th
3
113 +/- 20
Intel Core i7-5960X
44th
13
113 +/- 4
2 x AMD EPYC 7352 24-Core
44th
7
114 +/- 22
AMD EPYC 7452 32-Core
44th
4
114 +/- 22
2 x AMD EPYC 7452 32-Core
44th
5
114 +/- 20
2 x AMD EPYC 7742 64-Core
42nd
27
116 +/- 16
2 x AMD EPYC 7642 48-Core
41st
9
117 +/- 19
2 x AMD EPYC 7552 48-Core
41st
5
118 +/- 19
Intel Xeon E-2278GEL
41st
5
118 +/- 16
Intel Core i9-7980XE
40th
7
121 +/- 11
Intel Core i9-9900K
39th
5
122
AMD EPYC 7702 64-Core
39th
8
123 +/- 18
Intel Xeon Gold 6226R
38th
7
124
Intel Core i7-1165G7
35th
15
130
Intel Core i7-9750H
35th
4
130 +/- 22
2 x Intel Xeon Platinum 8280
33rd
25
134 +/- 10
2 x Intel Xeon Gold 6258R
33rd
4
134 +/- 15
2 x Intel Xeon Gold 5220R
33rd
12
134 +/- 11
2 x Intel Xeon Platinum 8272CL
32nd
4
135
AMD Ryzen Threadripper 3970X 32-Core
30th
28
139
2 x Intel Xeon Platinum 8259L
29th
5
140 +/- 1
Low-Tier
25th
> 144
Intel Core i7-1065G7
25th
18
146 +/- 24
AMD EPYC 7601 32-Core
24th
5
147 +/- 15
Intel Core i7-8550U
24th
3
149 +/- 20
Intel Xeon Gold 5218
23rd
7
150 +/- 4
AMD Ryzen Threadripper 3960X 24-Core
22nd
21
156
Intel Xeon Gold 5217
22nd
5
156 +/- 15
Intel Core i5-3427U
21st
3
165 +/- 34
2 x Intel Xeon Silver 4215R
20th
3
168
Intel Xeon E-2286M
20th
7
172
AMD Ryzen 5 2600 Six-Core
19th
6
173
2 x Intel Xeon Gold 6138
19th
3
180
2 x Intel Xeon Silver 4214R
19th
3
180
Intel Core i7-5775C
17th
4
187
Intel Xeon Platinum 8253
16th
5
194 +/- 2
Intel Xeon Silver 4216
16th
8
195 +/- 2
AMD Ryzen 5 4500U
16th
13
195
AMD Ryzen 7 4700U
15th
3
203
AMD Ryzen 5 3400G
15th
3
206
Intel Core i7-2700K
14th
9
216 +/- 39
2 x Intel Xeon Silver 4210
14th
3
225
Intel Pentium G3258
12th
4
243 +/- 35
Intel Core i5-2520M
12th
4
246 +/- 41
ARMv8 Neoverse-N1 64-Core
11th
4
257
Intel Xeon Silver 4108
11th
7
260 +/- 5
Intel Xeon E3-1275 v6
10th
8
280
Intel Core i7 990X
9th
7
314 +/- 74
Intel Core i5-8250U
9th
3
336
Intel Core i5-7200U
5th
3
437
ARMv7 Cortex-A72 4-Core
2nd
3
2016
OpenBenchmarking.orgDistribution Of Public Results - Primate Phylogeny Analysis1011 Results Range From 45 To 18923 Seconds454238011179155719352313269130693447382542034581495953375715609364716849722776057983836187399117949598731025110629110071138511763121411251912897132751365314031144091478715165155431592116299166771705517433178111818918567189452004006008001000

Based on OpenBenchmarking.org data, the selected test / test configuration (Timed MrBayes Analysis 3.2.7 - Primate Phylogeny Analysis) has an average run-time of 9 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkPrimate Phylogeny AnalysisRun-Time306090120150Min: 2 / Avg: 8.92 / Max: 136

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.5%.

OpenBenchmarking.orgPercent, Fewer Is BetterAverage Deviation Between RunsPrimate Phylogeny AnalysisDeviation3691215Min: 0 / Avg: 0.45 / Max: 12

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