Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny.

Learn more about this test at the upstream project site: https://github.com/NBISweden/MrBayes.

This scientific test profile is maintained by Andrew Schofield. This OpenBenchmarking.org test profile was created on 6 December 2010 and last updated on 11 October 2019. To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark mrbayes.

This test has an average install time of 3 minutes, 2 seconds and an average run-time of 1 minute, 38 seconds.

150k+ Downloads

Installation StatsTest Completion StatsOpenBenchmarking.orgEventsTimed MrBayes Analysis Popularitypts/mrbayes2015.102015.122016.022016.042016.062016.082016.102016.122017.022017.042017.062017.082017.102017.122018.022018.042018.062018.082018.102018.122019.022019.042019.062019.082019.102019.122020.022020.042020.062020.0880160240320400

* Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting.

Revision History

pts/mrbayes-1.4.0   [View Source]   11 Oct 2019 11:45 EDT
Update against upstream, add Windows support.

pts/mrbayes-1.3.2   [View Source]   26 Aug 2018 17:06 EDT
Update download links.

pts/mrbayes-1.3.1   [View Source]   07 Feb 2018 13:41 EST
Use built-in mpich/mpi, add SHA256 for download file.

pts/mrbayes-1.3.0   [View Source]   09 Sep 2017 14:07 EDT
Fix for higher core count CPUs

pts/mrbayes-1.2.0   [View Source]   06 Dec 2010 14:57 EST
Initial import into OpenBenchmarking.org

Suites Using This Test

C/C++ Compiler Tests

CPU Massive

Scientific Computing

MPI Benchmarks

Bioinformatics

Performance Metrics

Analyze Test Configuration:

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

OpenBenchmarking.org metrics for this test profile configuration based on 861 public samples since 11 October 2019 with the latest data as of 20 October 2020.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
Seconds (Average)
Mid-Tier
75th
> 90
Median
50th
111
Low-Tier
25th
> 146
4th
469
OpenBenchmarking.orgDistribution Of Public Results - Primate Phylogeny Analysis861 Results Range From 63 To 18923 Seconds634418191197157519532331270930873465384342214599497753555733611164896867724576238001837987579135951398911026910647110251140311781121591253712915132931367114049144271480515183155611593916317166951707317451178291820718585189632004006008001000

Based on OpenBenchmarking.org data, the selected test / test configuration (Timed MrBayes Analysis 3.2.7 - Primate Phylogeny Analysis) has an average run-time of 10 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkPrimate Phylogeny AnalysisRun-Time306090120150Min: 2 / Avg: 9.28 / Max: 136

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.4%.

OpenBenchmarking.orgPercent, Fewer Is BetterAverage Deviation Between RunsPrimate Phylogeny AnalysisDeviation3691215Min: 0 / Avg: 0.43 / Max: 12

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