saf51015i-16c20211008-1

Intel Atom C3958 testing with a American Megatrends 5.13 and ASPEED on Ubuntu 16.04 via the Phoronix Test Suite.

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saf51015i
October 11 2021
  10 Hours, 32 Minutes
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saf51015i-16c20211008-1OpenBenchmarking.orgPhoronix Test Suite 10.8.0Intel Atom C3958 @ 2.00GHz (16 Cores)American Megatrends 5.13Intel Device 19802 x 16384 MB DDR4-2400MHz Kingston256GB SanDisk SD9SB8W2 + 16GB DF4016ASPEED4 x Intel I210 + 4 x Intel I350 + 4 x Intel Device 15c4Ubuntu 16.044.4.0-116-generic (x86_64)GCC 5.4.0 20160609 + Clang 3.8.0-2ubuntu4ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSaf51015i-16c20211008-1 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x10- Python 2.7.12 + Python 3.5.2- meltdown: Mitigation of PTI + spectre_v1: Mitigation of OSB (observable speculation barrier Intel v6) + spectre_v2: Mitigation of Full generic retpoline

saf51015i-16c20211008-1minife: Smallcloverleaf: Lagrangian-Eulerian Hydrodynamicscp2k: Fayalite-FISTnamd: ATPase Simulation - 327,506 Atomsdolfyn: Computational Fluid Dynamicsamg: ffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 2D FFT Size 32fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 4096pennant: sedovbigpennant: leblancbigmrbayes: Primate Phylogeny Analysisnwchem: C240 Buckyballhmmer: Pfam Database Searchincompact3d: input.i3d 129 Cells Per Directionincompact3d: input.i3d 193 Cells Per Directionmafft: Multiple Sequence Alignment - LSU RNAmocassin: Dust 2D tau100.0lulesh: arrayfire: BLAS CPUmt-dgemm: Sustained Floating-Point Ratehimeno: Poisson Pressure Solversaf51015i4369.40263.783726.3315.1970163.71718809726713284.3245925163160.93294.52114.71609.34163.89283.66529.64485.5384.4810134.28891250.03218680.2406.64458.3426666209.72132933.4845172315.7767124.0520.7462661207.865890OpenBenchmarking.org

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Smallsaf51015i9001800270036004500SE +/- 4.60, N = 34369.401. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm.in input file (Problem 5). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamicssaf51015i60120180240300SE +/- 0.08, N = 3263.781. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 8.1Input: Fayalite-FISTsaf51015i80016002400320040003726.33

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomssaf51015i1.16932.33863.50794.67725.8465SE +/- 0.05035, N = 35.19701

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamicssaf51015i1428425670SE +/- 0.19, N = 363.72

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmark 1.2saf51015i40M80M120M160M200MSE +/- 122075.96, N = 31880972671. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -pthread -lmpi

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 7.0Test: N=256, 1D Complex FFT Routinesaf51015i3K6K9K12K15KSE +/- 60.90, N = 313284.321. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32saf51015i7001400210028003500SE +/- 7.13, N = 33160.91. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32saf51015i7001400210028003500SE +/- 4.31, N = 33294.51. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096saf51015i5001000150020002500SE +/- 4.07, N = 32114.71. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096saf51015i30060090012001500SE +/- 2.86, N = 31609.31. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32saf51015i9001800270036004500SE +/- 0.10, N = 34163.81. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32saf51015i2K4K6K8K10KSE +/- 20.34, N = 39283.61. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096saf51015i14002800420056007000SE +/- 4.51, N = 36529.61. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096saf51015i10002000300040005000SE +/- 13.43, N = 34485.51. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbigsaf51015i80160240320400SE +/- 0.44, N = 3384.481. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbigsaf51015i306090120150SE +/- 0.15, N = 3134.291. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysissaf51015i30060090012001500SE +/- 0.67, N = 31250.031. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msha -maes -mrdrnd -mmpx -O3 -std=c99 -pedantic -lm

NWChem

NWChem is an open-source high performance computational chemistry package. Per NWChem's documentation, "NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters." Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNWChem 7.0.2Input: C240 Buckyballsaf51015i4K8K12K16K20K18680.21. (F9X) gfortran options: -lnwctask -lccsd -lmcscf -lselci -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft -lgradients -lcphf -lesp -lddscf -ldangchang -lguess -lhessian -lvib -lnwcutil -lrimp2 -lproperty -lsolvation -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw -lpspw -lband -lnwpwlib -lcafe -lspace -lanalyze -lqhop -lpfft -ldplot -ldrdy -lvscf -lqmmm -lqmd -letrans -ltce -lbq -lmm -lcons -lperfm -ldntmc -lccca -ldimqm -lga -larmci -lpeigs -l64to32 -lopenblas -lpthread -lrt -llapack -lnwcblas -lmpi_usempif08 -lmpi_mpifh -lmpi -lcomex -lm -m64 -ffast-math -fdefault-integer-8 -finline-functions -O2

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Searchsaf51015i90180270360450SE +/- 0.30, N = 3406.641. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 129 Cells Per Directionsaf51015i1326395265SE +/- 0.07, N = 358.341. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 193 Cells Per Directionsaf51015i50100150200250SE +/- 0.03, N = 3209.721. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAsaf51015i816243240SE +/- 0.08, N = 333.481. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Monte Carlo Simulations of Ionised Nebulae

Mocassin is the Monte Carlo Simulations of Ionised Nebulae. MOCASSIN is a fully 3D or 2D photoionisation and dust radiative transfer code which employs a Monte Carlo approach to the transfer of radiation through media of arbitrary geometry and density distribution. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMonte Carlo Simulations of Ionised Nebulae 2019-03-24Input: Dust 2D tau100.0saf51015i1102203304405505171. (F9X) gfortran options: -cpp -Jsource/ -ffree-line-length-0 -lm -std=legacy -O3 -O2 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.3saf51015i5001000150020002500SE +/- 4.56, N = 32315.781. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

ArrayFire

ArrayFire is an GPU and CPU numeric processing library, this test uses the built-in CPU and OpenCL ArrayFire benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS, More Is BetterArrayFire 3.7Test: BLAS CPUsaf51015i306090120150SE +/- 0.20, N = 3124.051. (CXX) g++ options: -rdynamic

ACES DGEMM

This is a multi-threaded DGEMM benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterACES DGEMM 1.0Sustained Floating-Point Ratesaf51015i0.16790.33580.50370.67160.8395SE +/- 0.001847, N = 30.7462661. (CC) gcc options: -O3 -march=native -fopenmp

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solversaf51015i30060090012001500SE +/- 0.19, N = 31207.871. (CC) gcc options: -O3