NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign.
To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark namd.
OpenBenchmarking.org metrics for this test profile configuration based on 71 public results since 23 September 2024 with the latest data as of 10 October 2024.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (NAMD 3.0 - Input: ATPase with 327,506 Atoms) has an average run-time of 5 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.2%.
Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.
This test profile binary relies on the shared libraries libpthread.so.0, libdl.so.2, libm.so.6, libmvec.so.1, libz.so.1, libc.so.6.
This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.
1 System - 37 Benchmark Results |
AMD Ryzen 5 7600 6-Core - MSI PRO B650M-B - AMD Device 14d8 Ubuntu 24.04 - 6.11.0-061100-generic - GNOME Shell 46.0 |
1 System - 37 Benchmark Results |
AMD Ryzen 5 7600 6-Core - MSI PRO B650M-B - AMD Device 14d8 Ubuntu 24.04 - 6.11.0-061100-generic - GNOME Shell 46.0 |
1 System - 49 Benchmark Results |
AMD Ryzen 9 9900X 12-Core - Shenzhen Meigao Electronic Equipment MS-A1 A5WSR v1.1 - AMD Device 14d8 Ubuntu 22.04 - 6.8.0-45-generic - 1.3.255 |
6 Systems - 344 Benchmark Results |
Intel Core i7-1185G7 - Dell XPS 13 9310 0DXP1F - Intel Tiger Lake-LP Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell |
2 Systems - 54 Benchmark Results |
Intel Core Ultra 7 256V - ASUS Zenbook S 14 UX5406SA_UX5406SA UX5406SA v1.0 - Intel Device a87f Ubuntu 24.10 - 6.11.0-phx - GNOME Shell 47.0 |
2 Systems - 79 Benchmark Results |
Intel Core i9-14900K - ASUS PRIME Z790-P WIFI - Intel Raptor Lake-S PCH Ubuntu 24.04 - 6.10.0-061000rc6daily20240706-generic - GNOME Shell 46.0 |
2 Systems - 28 Benchmark Results |
Intel Xeon 6980P - Intel BIRCHSTREAM - Intel Ice Lake IEH Ubuntu 24.04 - 6.8.0-22-generic - GCC 13.2.0 |
3 Systems - 3 Benchmark Results |
Intel Core Ultra 7 155H - MTL Swift SFG14-72T Coral_MTH - Intel Device 7e7f Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell |
Featured Screen Resolution Comparison |
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3 Systems - 3 Benchmark Results |
AMD Ryzen AI 9 365 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507 Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
4 Systems - 8 Benchmark Results |
AMD Ryzen Threadripper 3990X 64-Core - Gigabyte TRX40 AORUS PRO WIFI - AMD Starship Pop 22.04 - 6.8.0-76060800daily20240311-generic - GNOME Shell 42.5 |
5 Systems - 2 Benchmark Results |
AMD Ryzen Threadripper 7980X 64-Cores - System76 Thelio Major - AMD Device 14a4 Ubuntu 24.10 - 6.11.0-7-generic - GNOME Shell 47.0 |
4 Systems - 42 Benchmark Results |
2 x Intel Xeon Gold 6430 - N/A X640 G50 60EA32X v24003523 - Intel Device 1bce Ubuntu 22.04 - 5.15.0-121-generic - 1.3.255 |
2 Systems - 43 Benchmark Results |
2 x Intel Xeon Gold 6430 - N/A X640 G50 60EA32X v24003523 - Intel Device 1bce Ubuntu 22.04 - 5.15.0-121-generic - GCC 11.4.0 + CUDA 12.4 |
2 Systems - 35 Benchmark Results |
AMD EPYC 9354P 32-Core - Dell PowerEdge R7615 [0G9DHV] - AMD Device 14a4 Debian 12 - 6.5.13-5-pve - GCC 12.2.0 |
2 Systems - 54 Benchmark Results |
Intel Core Ultra 7 256V - ASUS Zenbook S 14 UX5406SA_UX5406SA UX5406SA v1.0 - Intel Device a87f Ubuntu 24.10 - 6.11.0-phx - GNOME Shell 47.0 |
4 Systems - 8 Benchmark Results |
AMD Ryzen Threadripper 3990X 64-Core - Gigabyte TRX40 AORUS PRO WIFI - AMD Starship Pop 22.04 - 6.8.0-76060800daily20240311-generic - GNOME Shell 42.5 |
2 Systems - 28 Benchmark Results |
Intel Xeon 6980P - Intel BIRCHSTREAM - Intel Ice Lake IEH Ubuntu 24.04 - 6.8.0-22-generic - GCC 13.2.0 |
Featured Screen Resolution Comparison |
AMD Ryzen AI 9 HX 370 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507 Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
2 Systems - 79 Benchmark Results |
Intel Core i9-14900K - ASUS PRIME Z790-P WIFI - Intel Raptor Lake-S PCH Ubuntu 24.04 - 6.10.0-061000rc6daily20240706-generic - GNOME Shell 46.0 |
2 Systems - 79 Benchmark Results |
Intel Core i9-14900K - ASUS PRIME Z790-P WIFI - Intel Raptor Lake-S PCH Ubuntu 24.04 - 6.10.0-061000rc6daily20240706-generic - GNOME Shell 46.0 |
Featured Screen Resolution Comparison |
AMD Ryzen AI 9 HX 370 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507 Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
2 Systems - 28 Benchmark Results |
Intel Xeon 6980P - Intel BIRCHSTREAM - Intel Ice Lake IEH Ubuntu 24.04 - 6.8.0-22-generic - GCC 13.2.0 |
3 Systems - 3 Benchmark Results |
Intel Core Ultra 7 155H - MTL Swift SFG14-72T Coral_MTH - Intel Device 7e7f Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
5 Systems - 2 Benchmark Results |
AMD Ryzen Threadripper 7980X 64-Cores - System76 Thelio Major - AMD Device 14a4 Ubuntu 24.10 - 6.11.0-7-generic - GNOME Shell 47.0 |
2 Systems - 82 Benchmark Results |
2 x Intel Xeon 6980P - Intel BIRCHSTREAM - Intel Ice Lake IEH Ubuntu 24.04 - 6.8.0-45-generic - GCC 13.2.0 |
3 Systems - 3 Benchmark Results |
AMD Ryzen AI 9 365 - ASUS Zenbook S 16 UM5606WA_UM5606WA UM5606WA v1.0 - AMD Device 1507 Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
3 Systems - 3 Benchmark Results |
Intel Core Ultra 7 155H - MTL Swift SFG14-72T Coral_MTH - Intel Device 7e7f Ubuntu 24.10 - 6.11.0-rc6-phx - GNOME Shell 47.0 |
2 Systems - 54 Benchmark Results |
Intel Core Ultra 7 256V - ASUS Zenbook S 14 UX5406SA_UX5406SA UX5406SA v1.0 - Intel Device a87f Ubuntu 24.10 - 6.11.0-phx - GNOME Shell 47.0 |
1 System - 37 Benchmark Results |
AMD Ryzen 5 7600 6-Core - MSI PRO B650M-B - AMD Device 14d8 Ubuntu 24.04 - 6.11.0-061100-generic - GNOME Shell 46.0 |