2022-07-15-0721

KVM testing on AlmaLinux 8.6 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2207154-NE-20220715002
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
16 x AMD EPYC
July 15 2022
  52 Minutes
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2022-07-15-0721OpenBenchmarking.orgPhoronix Test Suite16 x AMD EPYC (with IBPB) (16 Cores)RDO OpenStack Compute (1.11.0-2.el7 BIOS)Intel 440FX 82441FX PMC2 x 16 GB RAM100GBCirrus Logic GD 5446Red Hat Virtio deviceAlmaLinux 8.64.18.0-305.3.1.el8_4.x86_64 (x86_64)GCC 8.5.0 20210514xfs1024x768KVMProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem Layer2022-07-15-0721 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - CPU Microcode: 0x1000065- Python 3.6.8- SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2022-07-15-0721himeno: Poisson Pressure Solvermafft: Multiple Sequence Alignment - LSU RNAhmmer: Pfam Database Searchqmcpack: simple-H2Omrbayes: Primate Phylogeny Analysis16 x AMD EPYC3027.83134016.037173.75246.928238.837OpenBenchmarking.org

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver16 x AMD EPYC6001200180024003000SE +/- 31.21, N = 53027.831. (CC) gcc options: -O3 -mavx2

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA16 x AMD EPYC48121620SE +/- 0.08, N = 316.041. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search16 x AMD EPYC4080120160200SE +/- 1.31, N = 11173.751. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.13Input: simple-H2O16 x AMD EPYC1122334455SE +/- 0.17, N = 346.931. (CXX) g++ options: -pthread -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lpthread -lm -ldl

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysis16 x AMD EPYC50100150200250SE +/- 0.70, N = 3238.841. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm