hmmertxt1

AMD Ryzen Embedded V2748 testing with a ASRock IMB-V2000 (L0.15 BIOS) and AMD Renoir on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2105011-HA-HMMERTXT156
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hmmertxt1OpenBenchmarking.orgPhoronix Test Suite 10.4.0m1AMD Ryzen Embedded V2748 @ 2.90GHz (8 Cores / 16 Threads)ASRock IMB-V2000 (L0.15 BIOS)AMD Renoir Root Complex2 x 16384 MB DDR4-2933MT/s Kingston1000GB Samsung SSD 980 1TB + Samsung SSD 980 500GB + 2 x 10001GB Seagate ST10000NE0008-2PAMD Renoir (1600/1466MHz)Realtek RTL8125 2.5GbE + Realtek RTL8111/8168/8411Ubuntu 20.045.8.0-50-generic (x86_64)GNOME Shell 3.36.7X Server 1.20.91.2.131GCC 9.3.0ext4ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay ServerVulkanCompilerFile-SystemHmmertxt1 BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0x8600103- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database SearchAMD Ryzen Embedded V27484080120160200SE +/- 1.02, N = 3183.721. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm