md xeon

Intel Core i7-10700T testing on Ubuntu 20.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2102218-HA-MDXEON18014
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C/C++ Compiler Tests 2 Tests
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HPC - High Performance Computing 11 Tests
Molecular Dynamics 11 Tests
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February 20 2021
  4 Hours, 48 Minutes
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February 20 2021
  4 Hours, 49 Minutes
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February 21 2021
  4 Hours, 49 Minutes
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1

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0xe0 - Thermald 2.3
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2

3

Processor: Intel Core i7-10700T @ 4.50GHz (8 Cores / 16 Threads), Motherboard: Logic Supply RXM-181 (Z01-0002A026 BIOS), Chipset: Intel Comet Lake PCH, Memory: 32GB, Disk: 256GB TS256GMTS800, Graphics: (1200MHz), Audio: Realtek ALC233, Network: Intel I219-LM + Intel I210

OS: Ubuntu 20.10, Kernel: 5.8.0-43-generic (x86_64), Desktop: GNOME Shell 3.38.2, Display Server: X Server 1.20.9, Vulkan: 1.2.145, Compiler: GCC 10.2.0, File-System: ext4

md xeonProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerVulkanCompilerFile-System123Intel Core i7-10700T @ 4.50GHz (8 Cores / 16 Threads)Logic Supply RXM-181 (Z01-0002A026 BIOS)Intel Comet Lake PCH32GB256GB TS256GMTS800(1200MHz)Realtek ALC233Intel I219-LM + Intel I210Ubuntu 20.105.8.0-43-generic (x86_64)GNOME Shell 3.38.2X Server 1.20.91.2.145GCC 10.2.0ext4OpenBenchmarking.orgKernel Details- Transparent Huge Pages: madviseCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: intel_pstate powersave - CPU Microcode: 0xe0 - Thermald 2.3 Security Details- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

123Result OverviewPhoronix Test Suite100%100%101%101%OpenFOAMNAMDDolfynIncompact3DLULESHLAMMPS Molecular Dynamics SimulatorPennantGROMACSminiFECP2K Molecular DynamicsCloverLeaf

md xeonlammps: 20k Atomsopenfoam: Motorbike 60Mincompact3d: Cylindercp2k: Fayalite-FIST Datagromacs: water_GMX50_bareopenfoam: Motorbike 30Mcloverleaf: Lagrangian-Eulerian Hydrodynamicsnamd: ATPase Simulation - 327,506 Atomspennant: sedovbigpennant: leblancbigminife: Smalldolfyn: Computational Fluid Dynamicslulesh: lammps: Rhodopsin Protein1234.0831309.36567.9941001677.0570.651250.98160.963.21167119.081372.648344696.9622.1414551.14445.6914.0841314.89570.5599571659.5350.652256.49161.163.21563119.532272.761684697.7622.0294549.97595.6394.0651313.37569.4654341656.4730.651254.75161.043.19349119.162672.873734699.1422.1844571.40545.670OpenBenchmarking.org

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: 20k Atoms3120.91891.83782.75673.67564.5945SE +/- 0.005, N = 3SE +/- 0.013, N = 3SE +/- 0.003, N = 34.0654.0834.0841. (CXX) g++ options: -O3 -pthread -lm

OpenFOAM

OpenFOAM is the leading free, open source software for computational fluid dynamics (CFD). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 8Input: Motorbike 60M23130060090012001500SE +/- 1.64, N = 3SE +/- 1.67, N = 3SE +/- 3.12, N = 31314.891313.371309.361. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

Incompact3D

Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterIncompact3D 2020-09-17Input: Cylinder231120240360480600SE +/- 1.40, N = 3SE +/- 0.85, N = 3SE +/- 0.98, N = 3570.56569.47567.991. (F9X) gfortran options: -cpp -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 8.1Fayalite-FIST Data1234008001200160020001677.061659.541656.47

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2021Input: water_GMX50_bare1320.14670.29340.44010.58680.7335SE +/- 0.001, N = 3SE +/- 0.001, N = 3SE +/- 0.001, N = 30.6510.6510.6521. (CXX) g++ options: -O3 -pthread

OpenFOAM

OpenFOAM is the leading free, open source software for computational fluid dynamics (CFD). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 8Input: Motorbike 30M23160120180240300SE +/- 3.35, N = 3SE +/- 2.47, N = 3SE +/- 1.63, N = 3256.49254.75250.981. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm.in input file (Problem 5). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamics2314080120160200SE +/- 0.02, N = 3SE +/- 0.14, N = 3SE +/- 0.11, N = 3161.16161.04160.961. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms2130.72351.4472.17052.8943.6175SE +/- 0.00423, N = 3SE +/- 0.00939, N = 3SE +/- 0.00592, N = 33.215633.211673.19349

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbig231306090120150SE +/- 0.59, N = 3SE +/- 0.66, N = 3SE +/- 0.61, N = 3119.53119.16119.081. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbig3211632486480SE +/- 0.07, N = 3SE +/- 0.20, N = 3SE +/- 0.11, N = 372.8772.7672.651. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Small12310002000300040005000SE +/- 8.20, N = 3SE +/- 8.47, N = 3SE +/- 7.76, N = 34696.964697.764699.141. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics312510152025SE +/- 0.07, N = 3SE +/- 0.09, N = 3SE +/- 0.00, N = 322.1822.1422.03

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.321310002000300040005000SE +/- 47.39, N = 5SE +/- 50.11, N = 3SE +/- 45.89, N = 54549.984551.144571.411. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: Rhodopsin Protein2311.28052.5613.84155.1226.4025SE +/- 0.028, N = 3SE +/- 0.021, N = 3SE +/- 0.009, N = 35.6395.6705.6911. (CXX) g++ options: -O3 -pthread -lm

1

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0xe0 - Thermald 2.3
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 20 February 2021 07:42 by user phoronix.

2

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0xe0 - Thermald 2.3
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 20 February 2021 14:06 by user phoronix.

3

Processor: Intel Core i7-10700T @ 4.50GHz (8 Cores / 16 Threads), Motherboard: Logic Supply RXM-181 (Z01-0002A026 BIOS), Chipset: Intel Comet Lake PCH, Memory: 32GB, Disk: 256GB TS256GMTS800, Graphics: (1200MHz), Audio: Realtek ALC233, Network: Intel I219-LM + Intel I210

OS: Ubuntu 20.10, Kernel: 5.8.0-43-generic (x86_64), Desktop: GNOME Shell 3.38.2, Display Server: X Server 1.20.9, Vulkan: 1.2.145, Compiler: GCC 10.2.0, File-System: ext4

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate powersave - CPU Microcode: 0xe0 - Thermald 2.3
Security Notes: itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 21 February 2021 08:37 by user phoronix.