hmmertest

2 x Intel Xeon Gold 6342 testing with a Aquarius Server 621AC AQC621AC (L0.17 BIOS) and ASPEED on Ubuntu 23.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2410042-NE-HMMERTEST19
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Result
Identifier
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Performance Per
Dollar
Date
Run
  Test
  Duration
2 x Intel Xeon Gold 6342
October 04
  9 Minutes


hmmertestOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Gold 6342 @ 3.50GHz (48 Cores / 96 Threads)Aquarius Server 621AC AQC621AC (L0.17 BIOS)Intel Ice Lake IEH2016GB4 x 960GB SAMSUNG MZQL2960HCJR-00A07 + 200GB INTEL SSDPEL1K200GA + 480GB INTEL SSDSCKKB48 + 1918GB MR9560-16iASPEEDIntel I225-LM + 4 x Intel E810-C for SFPUbuntu 23.046.2.0-39-generic (x86_64)GNOME Shell 44.3X Server 1.21.1.7GCC 12.3.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen ResolutionHmmertest BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-12-DAPbBt/gcc-12-12.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-12-DAPbBt/gcc-12-12.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate powersave (EPP: balance_performance) - CPU Microcode: 0xd0003b9- gather_data_sampling: Mitigation of Microcode + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling PBRSB-eIBRS: SW sequence + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search2 x Intel Xeon Gold 63424080120160200SE +/- 0.26, N = 3173.621. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi