20240206-bioinfo_bench
2 x Intel Xeon E5-2650 v4 testing with a ASUS Z10PE-D8 WS (3304 BIOS) and NVIDIA GeForce GTX 1080 Ti 11GB on Ubuntu 20.04 via the Phoronix Test Suite.
20240206-bioinformatics_suite
Processor: 2 x Intel Xeon E5-2650 v4 @ 2.90GHz (24 Cores / 48 Threads), Motherboard: ASUS Z10PE-D8 WS (3304 BIOS), Chipset: Intel Xeon E7 v4/Xeon, Memory: 256GB, Disk: 1024GB Samsung SSD 960 PRO 1TB + 256GB Samsung SSD 850 + 4 x 16001GB Seagate ST16000NM001G-2K, Graphics: NVIDIA GeForce GTX 1080 Ti 11GB, Audio: Realtek ALC1150, Monitor: DELL E248WFP, Network: 2 x Intel I210
OS: Ubuntu 20.04, Kernel: 5.15.0-92-generic (x86_64), Desktop: GNOME Shell 3.36.9, Display Server: X Server 1.20.13, Display Driver: NVIDIA 525.147.05, OpenGL: 4.6.0, OpenCL: OpenCL 3.0 CUDA 12.0.151, Vulkan: 1.3.224, Compiler: GCC 9.4.0 + CUDA 12.2, File-System: ext4, Screen Resolution: 1920x1200
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0xb000040
Python Notes: Python 3.8.10
Security Notes: gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable
Timed MrBayes Analysis
This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.
QMCPACK
QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.
Input: H4_ae
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Input: Li2_STO_ae
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Input: LiH_ae_MSD
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Input: simple-H2O
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Input: O_ae_pyscf_UHF
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Input: FeCO6_b3lyp_gms
20240206-bioinformatics_suite: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun was unable to launch the specified application as it could not access
Timed HMMer Search
This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.
Timed MAFFT Alignment
This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.
Himeno Benchmark
The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.
20240206-bioinformatics_suite
Processor: 2 x Intel Xeon E5-2650 v4 @ 2.90GHz (24 Cores / 48 Threads), Motherboard: ASUS Z10PE-D8 WS (3304 BIOS), Chipset: Intel Xeon E7 v4/Xeon, Memory: 256GB, Disk: 1024GB Samsung SSD 960 PRO 1TB + 256GB Samsung SSD 850 + 4 x 16001GB Seagate ST16000NM001G-2K, Graphics: NVIDIA GeForce GTX 1080 Ti 11GB, Audio: Realtek ALC1150, Monitor: DELL E248WFP, Network: 2 x Intel I210
OS: Ubuntu 20.04, Kernel: 5.15.0-92-generic (x86_64), Desktop: GNOME Shell 3.36.9, Display Server: X Server 1.20.13, Display Driver: NVIDIA 525.147.05, OpenGL: 4.6.0, OpenCL: OpenCL 3.0 CUDA 12.0.151, Vulkan: 1.3.224, Compiler: GCC 9.4.0 + CUDA 12.2, File-System: ext4, Screen Resolution: 1920x1200
Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0xb000040
Python Notes: Python 3.8.10
Security Notes: gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable
Testing initiated at 6 February 2024 10:02 by user haikel.