20240206-bioinfo_bench

2 x Intel Xeon E5-2650 v4 testing with a ASUS Z10PE-D8 WS (3304 BIOS) and NVIDIA GeForce GTX 1080 Ti 11GB on Ubuntu 20.04 via the Phoronix Test Suite.

HTML result view exported from: https://openbenchmarking.org/result/2402066-NE-20240206B00.

20240206-bioinfo_benchProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLVulkanCompilerFile-SystemScreen Resolution20240206-bioinformatics_suite2 x Intel Xeon E5-2650 v4 @ 2.90GHz (24 Cores / 48 Threads)ASUS Z10PE-D8 WS (3304 BIOS)Intel Xeon E7 v4/Xeon256GB1024GB Samsung SSD 960 PRO 1TB + 256GB Samsung SSD 850 + 4 x 16001GB Seagate ST16000NM001G-2KNVIDIA GeForce GTX 1080 Ti 11GBRealtek ALC1150DELL E248WFP2 x Intel I210Ubuntu 20.045.15.0-92-generic (x86_64)GNOME Shell 3.36.9X Server 1.20.13NVIDIA 525.147.054.6.0OpenCL 3.0 CUDA 12.0.1511.3.224GCC 9.4.0 + CUDA 12.2ext41920x1200OpenBenchmarking.org- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-9-9QDOt0/gcc-9-9.4.0/debian/tmp-nvptx/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0xb000040- Python 3.8.10- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

20240206-bioinfo_benchmrbayes: Primate Phylogeny Analysishmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAhimeno: Poisson Pressure Solver20240206-bioinformatics_suite236.690216.98317.0782916.656861OpenBenchmarking.org

Timed MrBayes Analysis

Primate Phylogeny Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny Analysis20240206-bioinformatics_suite50100150200250SE +/- 2.16, N = 7236.691. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm -lreadline

Timed HMMer Search

Pfam Database Search

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database Search20240206-bioinformatics_suite50100150200250SE +/- 0.35, N = 3216.981. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

Multiple Sequence Alignment - LSU RNA

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA20240206-bioinformatics_suite48121620SE +/- 0.05, N = 317.081. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Himeno Benchmark

Poisson Pressure Solver

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver20240206-bioinformatics_suite6001200180024003000SE +/- 2.13, N = 32916.661. (CC) gcc options: -O3 -mavx2

Phoronix Test Suite v10.8.4