testebioinformaticsdebian1

KVM QEMU testing on Debian 11 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2312166-NE-TESTEBIOI83
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
QEMU Virtual 2.5
December 14 2023
  5 Hours, 22 Minutes
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QEMU Virtual 2.5

Processor: QEMU Virtual 2.5+ (8 Cores), Motherboard: QEMU Standard PC (i440FX + PIIX 1996) (rel-1.16.2-0-gea1b7a073390-prebuilt.qemu.org BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 3584MB, Disk: 86GB QEMU HDD, Graphics: llvmpipe, Monitor: QEMU Monitor, Network: Red Hat Virtio device

OS: Debian 11, Kernel: 5.10.0-26-amd64 (x86_64), Desktop: GNOME Shell 3.38.6, Display Server: X Server + Wayland, OpenGL: 4.5 Mesa 20.3.5 (LLVM 11.0.1 128 bits), Compiler: GCC 10.2.1 20210110, File-System: ext4, Screen Resolution: 1280x800, System Layer: KVM QEMU

Kernel Notes: Transparent Huge Pages: always
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x1
Python Notes: Python 3.9.2
Security Notes: gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

testebioinformaticsdebian1OpenBenchmarking.orgPhoronix Test SuiteQEMU Virtual 2.5+ (8 Cores)QEMU Standard PC (i440FX + PIIX 1996) (rel-1.16.2-0-gea1b7a073390-prebuilt.qemu.org BIOS)Intel 440FX 82441FX PMC3584MB86GB QEMU HDDllvmpipeQEMU MonitorRed Hat Virtio deviceDebian 115.10.0-26-amd64 (x86_64)GNOME Shell 3.38.6X Server + Wayland4.5 Mesa 20.3.5 (LLVM 11.0.1 128 bits)GCC 10.2.1 20210110ext41280x800KVM QEMUProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionSystem LayerTestebioinformaticsdebian1 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - CPU Microcode: 0x1- Python 3.9.2- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

testebioinformaticsdebian1mrbayes: Primate Phylogeny Analysisqmcpack: H4_aeqmcpack: Li2_STO_aeqmcpack: LiH_ae_MSDqmcpack: simple-H2Oqmcpack: O_ae_pyscf_UHFqmcpack: FeCO6_b3lyp_gmshmmer: Pfam Database Searchhimeno: Poisson Pressure SolverQEMU Virtual 2.5578.116157.71605.8523.42113.26809.51807.10302.1752227.218692OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisQEMU Virtual 2.5120240360480600SE +/- 5.79, N = 3567.801. (CC) gcc options: -mmmx -msse -msse2 -mssse3 -msse4.1 -msse4.2 -maes -O3 -std=c99 -pedantic -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisQEMU Virtual 2.5100200300400500Min: 559.44 / Avg: 567.8 / Max: 578.931. (CC) gcc options: -mmmx -msse -msse2 -mssse3 -msse4.1 -msse4.2 -maes -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: H4_aeQEMU Virtual 2.5306090120150SE +/- 1.38, N = 12157.71. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: Li2_STO_aeQEMU Virtual 2.530060090012001500SE +/- 5.84, N = 31605.81. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: LiH_ae_MSDQEMU Virtual 2.5110220330440550SE +/- 4.38, N = 3523.421. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: simple-H2OQEMU Virtual 2.5306090120150SE +/- 0.27, N = 3113.261. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: O_ae_pyscf_UHFQEMU Virtual 2.52004006008001000SE +/- 11.45, N = 3809.511. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.17.1Input: FeCO6_b3lyp_gmsQEMU Virtual 2.52004006008001000SE +/- 2.98, N = 3807.101. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -pthread -lm -ldl

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchQEMU Virtual 2.570140210280350SE +/- 18.06, N = 9302.181. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

QEMU Virtual 2.5: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status.

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverQEMU Virtual 2.55001000150020002500SE +/- 33.45, N = 152227.221. (CC) gcc options: -O3

QEMU Virtual 2.5

Processor: QEMU Virtual 2.5+ (8 Cores), Motherboard: QEMU Standard PC (i440FX + PIIX 1996) (rel-1.16.2-0-gea1b7a073390-prebuilt.qemu.org BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 3584MB, Disk: 86GB QEMU HDD, Graphics: llvmpipe, Monitor: QEMU Monitor, Network: Red Hat Virtio device

OS: Debian 11, Kernel: 5.10.0-26-amd64 (x86_64), Desktop: GNOME Shell 3.38.6, Display Server: X Server + Wayland, OpenGL: 4.5 Mesa 20.3.5 (LLVM 11.0.1 128 bits), Compiler: GCC 10.2.1 20210110, File-System: ext4, Screen Resolution: 1280x800, System Layer: KVM QEMU

Kernel Notes: Transparent Huge Pages: always
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: CPU Microcode: 0x1
Python Notes: Python 3.9.2
Security Notes: gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX unsupported + l1tf: Mitigation of PTE Inversion + mds: Vulnerable: Clear buffers attempted no microcode; SMT Host state unknown + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines STIBP: disabled RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 14 December 2023 16:48 by user xenserver.