pts-bioinformatics

Apple M2 Pro testing with a Apple Mac mini and Apple M2 Pro on macOS 13.5 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2312099-REIN-PTSBIOI15
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pts-bioinformatics
December 09 2023
  2 Minutes
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pts-bioinformatics

Processor: Apple M2 Pro (10 Cores), Motherboard: Apple Mac mini, Memory: 16GB, Disk: 461GB, Graphics: Apple M2 Pro, Monitor: Apple M2 Pro

OS: macOS 13.5, Kernel: 22.6.0 (arm64), Compiler: GCC 14.0.3 + Clang 17.0.6 + LLVM 17.0.6 + Xcode 14.3.1, File-System: APFS, Screen Resolution: x

Environment Notes: LDFLAGS=-L/opt/homebrew/opt/llvm/lib CPPFLAGS=-I/opt/homebrew/opt/llvm/include

pts-bioinformaticsOpenBenchmarking.orgPhoronix Test SuiteApple M2 Pro (10 Cores)Apple Mac mini16GB461GBApple M2 ProApple M2 PromacOS 13.522.6.0 (arm64)GCC 14.0.3 + Clang 17.0.6 + LLVM 17.0.6 + Xcode 14.3.1APFSxProcessorMotherboardMemoryDiskGraphicsMonitorOSKernelCompilerFile-SystemScreen ResolutionPts-bioinformatics PerformanceSystem Logs- LDFLAGS=-L/opt/homebrew/opt/llvm/lib CPPFLAGS=-I/opt/homebrew/opt/llvm/include

pts-bioinformaticsmafft: Multiple Sequence Alignment - LSU RNAhimeno: Standard ErrorStandard Deviationpts-bioinformatics8.2970.125.34%OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

pts-bioinformatics: The test quit with a non-zero exit status.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

pts-bioinformatics: The test quit with a non-zero exit status.

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNApts-bioinformatics246810SE +/- 0.118, N = 148.2971. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

pts-bioinformatics: The test quit with a non-zero exit status. E: himeno: line 2: ./himenobmtxpa: No such file or directory

pts-bioinformatics

Processor: Apple M2 Pro (10 Cores), Motherboard: Apple Mac mini, Memory: 16GB, Disk: 461GB, Graphics: Apple M2 Pro, Monitor: Apple M2 Pro

OS: macOS 13.5, Kernel: 22.6.0 (arm64), Compiler: GCC 14.0.3 + Clang 17.0.6 + LLVM 17.0.6 + Xcode 14.3.1, File-System: APFS, Screen Resolution: x

Environment Notes: LDFLAGS=-L/opt/homebrew/opt/llvm/lib CPPFLAGS=-I/opt/homebrew/opt/llvm/include

Testing initiated at 9 December 2023 07:23 by user m1.