benckt-namd

AMD Ryzen 7 5700X 8-Core testing with a ASUS TUF B450M-PRO GAMING (3802 BIOS) and eVGA NVIDIA GeForce RTX 3060 12GB on Ubuntu 23.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2309025-BENC-BENCKTN96
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benckt-namd
September 01 2023
  5 Minutes
benckt-namd-1
September 02 2023
  5 Minutes
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  5 Minutes


benckt-namdOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 7 5700X 8-Core @ 3.40GHz (8 Cores / 16 Threads)ASUS TUF B450M-PRO GAMING (3802 BIOS)AMD Starship/Matisse32GB1024GB ADATA SX8200PNP + 1500GB Seagate ST31500343ASeVGA NVIDIA GeForce RTX 3060 12GBNVIDIA GA106 HD AudioRealtek RTL8111/8168/8411Ubuntu 23.046.2.0-31-generic (x86_64)GNOME Shell 44.3X Server 1.21.1.7NVIDIA 535.86.054.6.0GCC 12.3.0btrfs3840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionBenckt-namd BenchmarksSystem Logs- Transparent Huge Pages: madvise- Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0xa20120a - gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsbenckt-namdbenckt-namd-10.40670.81341.22011.62682.0335SE +/- 0.00178, N = 3SE +/- 0.00500, N = 31.807701.78752