namd1

4 x Intel Xeon Gold 6130 testing with a Dell PowerEdge R940 [0D41HC] (2.15.1 BIOS) and Matrox G200eW3 on Debian GNU/Linux 11 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2308146-NE-NAMD1423940
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Result
Identifier
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Performance Per
Dollar
Date
Run
  Test
  Duration
patched
August 14 2023
  3 Minutes


namd1OpenBenchmarking.orgPhoronix Test Suite4 x Intel Xeon Gold 6130 @ 3.70GHz (64 Cores / 128 Threads)Dell PowerEdge R940 [0D41HC] (2.15.1 BIOS)Intel Sky Lake-E DMI3 Registers24 x 32 GB DDR4-2666MT/s 36ASF4G72PZ-2G6D11600GB Dell Flash PM1725b 1.6TB AIC + 1600GB Dell Flash NVMe PM1725 1.6TB AIC + 480GB INTEL SSDSC2KG480G7RMatrox G200eW34 x Intel X710 for 10GbE SFP+Debian GNU/Linux 116.1.38 (x86_64)1.0.2GCC 10.2.1 20210110ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelVulkanCompilerFile-SystemScreen ResolutionNamd1 BenchmarksSystem Logs- Transparent Huge Pages: always- Scaling Governor: intel_pstate performance (EPP: performance) - CPU Microcode: 0x2006e05- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Mitigation of IBRS + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of IBRS IBPB: conditional STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomspatched0.08980.17960.26940.35920.449SE +/- 0.00064, N = 30.39929