AMD Zen 3 Zen 4 Linux Server Performance

AMD Ryzen 7 5800X3D 8-Core testing with a ASUS ROG CROSSHAIR VIII HERO (4501 BIOS) and Sapphire AMD Radeon RX 6500 XT 4GB on Ubuntu 22.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2307028-NE-AMDZEN3ZE93
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Ryzen 7 5800X3D
July 02 2023
  57 Minutes
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Ryzen 7 5800X3D

Processor: AMD Ryzen 7 5800X3D 8-Core @ 3.40GHz (8 Cores / 16 Threads), Motherboard: ASUS ROG CROSSHAIR VIII HERO (4501 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 3201GB Micron_7450_MTFDKCC3T2TFS, Graphics: Sapphire AMD Radeon RX 6500 XT 4GB (2975/1124MHz), Audio: AMD Navi 21 HDMI Audio, Monitor: ASUS VP28U, Network: Realtek RTL8125 2.5GbE + Intel I211

OS: Ubuntu 22.04, Kernel: 5.19.0-46-generic (x86_64), Desktop: GNOME Shell 42.5, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 22.2.5-0ubuntu0.1~22.04.3 (LLVM 15.0.7 DRM 3.47), Vulkan: 1.3.224, Compiler: GCC 11.3.0, File-System: ext4, Screen Resolution: 3840x2160

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xa20120a
Java Notes: OpenJDK Runtime Environment (build 11.0.19+7-post-Ubuntu-0ubuntu122.04.1)
Python Notes: Python 3.10.6
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

AMD Zen 3 Zen 4 Linux Server PerformanceOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 7 5800X3D 8-Core @ 3.40GHz (8 Cores / 16 Threads)ASUS ROG CROSSHAIR VIII HERO (4501 BIOS)AMD Starship/Matisse64GB3201GB Micron_7450_MTFDKCC3T2TFSSapphire AMD Radeon RX 6500 XT 4GB (2975/1124MHz)AMD Navi 21 HDMI AudioASUS VP28URealtek RTL8125 2.5GbE + Intel I211Ubuntu 22.045.19.0-46-generic (x86_64)GNOME Shell 42.5X Server + Wayland4.6 Mesa 22.2.5-0ubuntu0.1~22.04.3 (LLVM 15.0.7 DRM 3.47)1.3.224GCC 11.3.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLVulkanCompilerFile-SystemScreen ResolutionAMD Zen 3 Zen 4 Linux Server Performance BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xa20120a - OpenJDK Runtime Environment (build 11.0.19+7-post-Ubuntu-0ubuntu122.04.1)- Python 3.10.6- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

AMD Zen 3 Zen 4 Linux Server Performancehpcg: 104 104 104 - 60minife: Smallminibude: OpenMP - BM1minibude: OpenMP - BM1namd: ATPase Simulation - 327,506 Atomsamg: libxsmm: 32libxsmm: 64heffte: c2c - FFTW - float - 128heffte: r2c - FFTW - float - 128heffte: c2c - FFTW - double - 128heffte: c2c - Stock - float - 128heffte: r2c - FFTW - double - 128heffte: r2c - Stock - float - 128heffte: c2c - Stock - double - 128heffte: r2c - Stock - double - 128qmcpack: Li2_STO_aeqmcpack: simple-H2Oqmcpack: FeCO6_b3lyp_gmsqmcpack: FeCO6_b3lyp_gmsRyzen 7 5800X3D4.944695275.93436.05817.4421.8445626088616771.1143.676.5519122.66919.058238.832447.056568.785014.186832.6027243.3921.668141.07147.45OpenBenchmarking.org

High Performance Conjugate Gradient

HPCG is the High Performance Conjugate Gradient and is a new scientific benchmark from Sandia National Lans focused for super-computer testing with modern real-world workloads compared to HPCC. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterHigh Performance Conjugate Gradient 3.1X Y Z: 104 104 104 - RT: 60Ryzen 7 5800X3D1.11262.22523.33784.45045.563SE +/- 0.01797, N = 34.944691. (CXX) g++ options: -O3 -ffast-math -ftree-vectorize -lmpi_cxx -lmpi

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: SmallRyzen 7 5800X3D11002200330044005500SE +/- 5.20, N = 35275.931. (CXX) g++ options: -O3 -fopenmp -lmpi_cxx -lmpi

miniBUDE

MiniBUDE is a mini application for the the core computation of the Bristol University Docking Engine (BUDE). This test profile currently makes use of the OpenMP implementation of miniBUDE for CPU benchmarking. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFInst/s, More Is BetterminiBUDE 20210901Implementation: OpenMP - Input Deck: BM1Ryzen 7 5800X3D90180270360450SE +/- 0.07, N = 3436.061. (CC) gcc options: -std=c99 -Ofast -ffast-math -fopenmp -march=native -lm

OpenBenchmarking.orgBillion Interactions/s, More Is BetterminiBUDE 20210901Implementation: OpenMP - Input Deck: BM1Ryzen 7 5800X3D48121620SE +/- 0.00, N = 317.441. (CC) gcc options: -std=c99 -Ofast -ffast-math -fopenmp -march=native -lm

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsRyzen 7 5800X3D0.4150.831.2451.662.075SE +/- 0.00086, N = 31.84456

Algebraic Multi-Grid Benchmark

AMG is a parallel algebraic multigrid solver for linear systems arising from problems on unstructured grids. The driver provided with AMG builds linear systems for various 3-dimensional problems. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFigure Of Merit, More Is BetterAlgebraic Multi-Grid Benchmark 1.2Ryzen 7 5800X3D60M120M180M240M300MSE +/- 170926.48, N = 32608861671. (CC) gcc options: -lparcsr_ls -lparcsr_mv -lseq_mv -lIJ_mv -lkrylov -lHYPRE_utilities -lm -fopenmp -lmpi

libxsmm

Libxsmm is an open-source library for specialized dense and sparse matrix operations and deep learning primitives. Libxsmm supports making use of Intel AMX, AVX-512, and other modern CPU instruction set capabilities. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOPS/s, More Is Betterlibxsmm 2-1.17-3645M N K: 32Ryzen 7 5800X3D1632486480SE +/- 0.00, N = 371.11. (CXX) g++ options: -dynamic -Bstatic -static-libgcc -lgomp -lm -lrt -ldl -lquadmath -lstdc++ -pthread -fPIC -std=c++14 -pedantic -O2 -fopenmp -fopenmp-simd -funroll-loops -ftree-vectorize -fdata-sections -ffunction-sections -fvisibility=hidden -march=core-avx2

OpenBenchmarking.orgGFLOPS/s, More Is Betterlibxsmm 2-1.17-3645M N K: 64Ryzen 7 5800X3D306090120150SE +/- 0.00, N = 3143.61. (CXX) g++ options: -dynamic -Bstatic -static-libgcc -lgomp -lm -lrt -ldl -lquadmath -lstdc++ -pthread -fPIC -std=c++14 -pedantic -O2 -fopenmp -fopenmp-simd -funroll-loops -ftree-vectorize -fdata-sections -ffunction-sections -fvisibility=hidden -march=core-avx2

HeFFTe - Highly Efficient FFT for Exascale

HeFFTe is the Highly Efficient FFT for Exascale software developed as part of the Exascale Computing Project. This test profile uses HeFFTe's built-in speed benchmarks under a variety of configuration options and currently catering to CPU/processor testing. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: c2c - Backend: FFTW - Precision: float - X Y Z: 128Ryzen 7 5800X3D20406080100SE +/- 0.66, N = 1576.551. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: r2c - Backend: FFTW - Precision: float - X Y Z: 128Ryzen 7 5800X3D306090120150SE +/- 1.12, N = 3122.671. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: c2c - Backend: FFTW - Precision: double - X Y Z: 128Ryzen 7 5800X3D510152025SE +/- 0.05, N = 319.061. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: c2c - Backend: Stock - Precision: float - X Y Z: 128Ryzen 7 5800X3D918273645SE +/- 0.31, N = 338.831. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: r2c - Backend: FFTW - Precision: double - X Y Z: 128Ryzen 7 5800X3D1122334455SE +/- 0.53, N = 347.061. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: r2c - Backend: Stock - Precision: float - X Y Z: 128Ryzen 7 5800X3D1530456075SE +/- 0.52, N = 1568.791. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: c2c - Backend: Stock - Precision: double - X Y Z: 128Ryzen 7 5800X3D48121620SE +/- 0.06, N = 314.191. (CXX) g++ options: -O3

OpenBenchmarking.orgGFLOP/s, More Is BetterHeFFTe - Highly Efficient FFT for Exascale 2.3Test: r2c - Backend: Stock - Precision: double - X Y Z: 128Ryzen 7 5800X3D816243240SE +/- 0.27, N = 332.601. (CXX) g++ options: -O3

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. QMCPACK is an open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. QMCPACK is supported by the U.S. Department of Energy. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.16Input: Li2_STO_aeRyzen 7 5800X3D50100150200250SE +/- 2.83, N = 3243.391. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.16Input: simple-H2ORyzen 7 5800X3D510152025SE +/- 0.04, N = 321.671. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.16Input: FeCO6_b3lyp_gmsRyzen 7 5800X3D306090120150SE +/- 0.06, N = 3141.071. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.16Input: FeCO6_b3lyp_gmsRyzen 7 5800X3D306090120150SE +/- 0.39, N = 3147.451. (CXX) g++ options: -fopenmp -foffload=disable -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -ffast-math -march=native -O3 -lm -ldl

Ryzen 7 5800X3D

Processor: AMD Ryzen 7 5800X3D 8-Core @ 3.40GHz (8 Cores / 16 Threads), Motherboard: ASUS ROG CROSSHAIR VIII HERO (4501 BIOS), Chipset: AMD Starship/Matisse, Memory: 64GB, Disk: 3201GB Micron_7450_MTFDKCC3T2TFS, Graphics: Sapphire AMD Radeon RX 6500 XT 4GB (2975/1124MHz), Audio: AMD Navi 21 HDMI Audio, Monitor: ASUS VP28U, Network: Realtek RTL8125 2.5GbE + Intel I211

OS: Ubuntu 22.04, Kernel: 5.19.0-46-generic (x86_64), Desktop: GNOME Shell 42.5, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 22.2.5-0ubuntu0.1~22.04.3 (LLVM 15.0.7 DRM 3.47), Vulkan: 1.3.224, Compiler: GCC 11.3.0, File-System: ext4, Screen Resolution: 3840x2160

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-aYxV0E/gcc-11-11.3.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xa20120a
Java Notes: OpenJDK Runtime Environment (build 11.0.19+7-post-Ubuntu-0ubuntu122.04.1)
Python Notes: Python 3.10.6
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 2 July 2023 15:37 by user phoronix.