2022-07-15-0850

KVM testing on AlmaLinux 8.6 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2207158-NE-20220715055
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
16 x AMD EPYC
July 15 2022
  4 Hours, 13 Minutes
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16 x AMD EPYC

Processor: 16 x AMD EPYC (with IBPB) (16 Cores), Motherboard: RDO OpenStack Compute (1.11.0-2.el7 BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 2 x 16 GB RAM, Disk: 100GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: AlmaLinux 8.6, Kernel: 4.18.0-305.3.1.el8_4.x86_64 (x86_64), Compiler: GCC 8.5.0 20210514, File-System: xfs, Screen Resolution: 1024x768, System Layer: KVM

Kernel Notes: Transparent Huge Pages: always
Compiler Notes: --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver
Processor Notes: CPU Microcode: 0x1000065
Security Notes: SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2022-07-15-0850OpenBenchmarking.orgPhoronix Test Suite16 x AMD EPYC (with IBPB) (16 Cores)RDO OpenStack Compute (1.11.0-2.el7 BIOS)Intel 440FX 82441FX PMC2 x 16 GB RAM100GBCirrus Logic GD 5446Red Hat Virtio deviceAlmaLinux 8.64.18.0-305.3.1.el8_4.x86_64 (x86_64)GCC 8.5.0 20210514xfs1024x768KVMProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionSystem Layer2022-07-15-0850 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - CPU Microcode: 0x1000065- SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2022-07-15-0850minife: Smallgromacs: MPI CPU - water_GMX50_barelammps: 20k Atomslammps: Rhodopsin Proteinlulesh: namd: ATPase Simulation - 327,506 Atomspennant: sedovbigpennant: leblancbigcloverleaf: Lagrangian-Eulerian Hydrodynamicscp2k: Fayalite-FISTdolfyn: Computational Fluid Dynamicsnwchem: C240 Buckyballincompact3d: input.i3d 129 Cells Per Directionincompact3d: input.i3d 193 Cells Per Directionopenfoam: motorBike - Mesh Timeopenfoam: motorBike - Execution Timeopenfoam: drivaerFastback, Medium Mesh Size16 x AMD EPYC9281.891.0298.0718.0406157.79552.1457649.0087036.4477362.731100.57430.0648327.719.464878177.065218672.26153.24OpenBenchmarking.org

miniFE

MiniFE Finite Element is an application for unstructured implicit finite element codes. Learn more via the OpenBenchmarking.org test page.

Problem Size: Large

16 x AMD EPYC: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: cat: '*.yaml': No such file or directory

OpenBenchmarking.orgCG Mflops, More Is BetterminiFE 2.2Problem Size: Small16 x AMD EPYC2K4K6K8K10KSE +/- 42.47, N = 39281.891. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi

Problem Size: Medium

16 x AMD EPYC: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: cat: '*.yaml': No such file or directory

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2022.1Implementation: MPI CPU - Input: water_GMX50_bare16 x AMD EPYC0.23150.4630.69450.9261.1575SE +/- 0.005, N = 31.0291. (CXX) g++ options: -O3 -pthread

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: 20k Atoms16 x AMD EPYC246810SE +/- 0.040, N = 38.0711. (CXX) g++ options: -O3 -pthread -lm

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: Rhodopsin Protein16 x AMD EPYC246810SE +/- 0.033, N = 38.0401. (CXX) g++ options: -O3 -pthread -lm

LULESH

LULESH is the Livermore Unstructured Lagrangian Explicit Shock Hydrodynamics. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgz/s, More Is BetterLULESH 2.0.316 x AMD EPYC13002600390052006500SE +/- 21.16, N = 36157.801. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms16 x AMD EPYC0.48280.96561.44841.93122.414SE +/- 0.00096, N = 32.14576

Pennant

Pennant is an application focused on hydrodynamics on general unstructured meshes in 2D. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: sedovbig16 x AMD EPYC1122334455SE +/- 0.09, N = 349.011. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

OpenBenchmarking.orgHydro Cycle Time - Seconds, Fewer Is BetterPennant 1.0.1Test: leblancbig16 x AMD EPYC816243240SE +/- 0.38, N = 336.451. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi

CloverLeaf

CloverLeaf is a Lagrangian-Eulerian hydrodynamics benchmark. This test profile currently makes use of CloverLeaf's OpenMP version and benchmarked with the clover_bm.in input file (Problem 5). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCloverLeafLagrangian-Eulerian Hydrodynamics16 x AMD EPYC1428425670SE +/- 0.64, N = 362.731. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp

CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. This test profile currently uses the SSMP (OpenMP) version of cp2k. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterCP2K Molecular Dynamics 8.2Input: Fayalite-FIST16 x AMD EPYC20040060080010001100.57

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics16 x AMD EPYC714212835SE +/- 0.10, N = 330.06

NWChem

NWChem is an open-source high performance computational chemistry package. Per NWChem's documentation, "NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters." Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterNWChem 7.0.2Input: C240 Buckyball16 x AMD EPYC2K4K6K8K10K8327.71. (F9X) gfortran options: -lnwctask -lccsd -lmcscf -lselci -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft -lgradients -lcphf -lesp -lddscf -ldangchang -lguess -lhessian -lvib -lnwcutil -lrimp2 -lproperty -lsolvation -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw -lpspw -lband -lnwpwlib -lcafe -lspace -lanalyze -lqhop -lpfft -ldplot -ldrdy -lvscf -lqmmm -lqmd -letrans -ltce -lbq -lmm -lcons -lperfm -ldntmc -lccca -ldimqm -lga -larmci -lpeigs -l64to32 -lopenblas -lpthread -lrt -llapack -lnwcblas -lmpi_usempif08 -lmpi_mpifh -lmpi -lcomex -lm -m64 -ffast-math -std=legacy -fdefault-integer-8 -finline-functions -O2

Xcompact3d Incompact3d

Xcompact3d Incompact3d is a Fortran-MPI based, finite difference high-performance code for solving the incompressible Navier-Stokes equation and as many as you need scalar transport equations. Learn more via the OpenBenchmarking.org test page.

Input: X3D-benchmarking input.i3d

16 x AMD EPYC: The test quit with a non-zero exit status. The test quit with a non-zero exit status. The test quit with a non-zero exit status. E: mpirun noticed that process rank 15 with PID 0 on node kiki exited on signal 9 (Killed).

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 129 Cells Per Direction16 x AMD EPYC510152025SE +/- 0.05, N = 319.461. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenBenchmarking.orgSeconds, Fewer Is BetterXcompact3d Incompact3d 2021-03-11Input: input.i3d 193 Cells Per Direction16 x AMD EPYC20406080100SE +/- 0.51, N = 377.071. (F9X) gfortran options: -cpp -O2 -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

OpenFOAM

OpenFOAM is the leading free, open-source software for computational fluid dynamics (CFD). This test profile currently uses the drivaerFastback test case for analyzing automotive aerodynamics or alternatively the older motorBike input. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 9Input: motorBike - Mesh Time16 x AMD EPYC163248648072.261. (CXX) g++ options: -std=c++14 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

OpenBenchmarking.orgSeconds, Fewer Is BetterOpenFOAM 9Input: motorBike - Execution Time16 x AMD EPYC306090120150153.241. (CXX) g++ options: -std=c++14 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm

Input: drivaerFastback, Large Mesh Size

16 x AMD EPYC: The test quit with a non-zero exit status. E: [0] --> FOAM FATAL ERROR:

Input: drivaerFastback, Small Mesh Size

16 x AMD EPYC: The test quit with a non-zero exit status. E: [0] --> FOAM FATAL ERROR:

Input: drivaerFastback, Medium Mesh Size

16 x AMD EPYC: The test quit with a non-zero exit status. E: [0] --> FOAM FATAL ERROR:

16 x AMD EPYC

Processor: 16 x AMD EPYC (with IBPB) (16 Cores), Motherboard: RDO OpenStack Compute (1.11.0-2.el7 BIOS), Chipset: Intel 440FX 82441FX PMC, Memory: 2 x 16 GB RAM, Disk: 100GB, Graphics: Cirrus Logic GD 5446, Network: Red Hat Virtio device

OS: AlmaLinux 8.6, Kernel: 4.18.0-305.3.1.el8_4.x86_64 (x86_64), Compiler: GCC 8.5.0 20210514, File-System: xfs, Screen Resolution: 1024x768, System Layer: KVM

Kernel Notes: Transparent Huge Pages: always
Compiler Notes: --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver
Processor Notes: CPU Microcode: 0x1000065
Security Notes: SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 15 July 2022 08:50 by user root.