ryzen 9 5900x compute AMD Ryzen 9 5900X 12-Core testing with a ASUS ROG CROSSHAIR VIII HERO (3202 BIOS) and Sapphire AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 6GB on Ubuntu 20.10 via the Phoronix Test Suite.
HTML result view exported from: https://openbenchmarking.org/result/2101248-HA-RYZEN959065&grw&sor .
ryzen 9 5900x compute Processor Motherboard Chipset Memory Disk Graphics Audio Monitor Network OS Kernel Desktop Display Server Display Driver OpenGL Vulkan Compiler File-System Screen Resolution 1 2 3 AMD Ryzen 9 5900X 12-Core @ 3.70GHz (12 Cores / 24 Threads) ASUS ROG CROSSHAIR VIII HERO (3202 BIOS) AMD Starship/Matisse 16GB 1000GB Samsung SSD 980 PRO 1TB Sapphire AMD Radeon RX 5600 OEM/5600 XT / 5700/5700 6GB (1780/875MHz) AMD Navi 10 HDMI Audio ASUS VP28U Realtek RTL8125 2.5GbE + Intel I211 Ubuntu 20.10 5.8.0-38-generic (x86_64) GNOME Shell 3.38.1 X Server 1.20.9 modesetting 1.20.9 4.6 Mesa 20.2.1 (LLVM 11.0.0) 1.2.131 GCC 10.2.0 ext4 3840x2160 OpenBenchmarking.org Kernel Details - Transparent Huge Pages: madvise Compiler Details - --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details - Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0xa201009 Python Details - 1: Python 3.8.6 Security Details - itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected
ryzen 9 5900x compute hmmer: Pfam Database Search mafft: Multiple Sequence Alignment - LSU RNA mrbayes: Primate Phylogeny Analysis himeno: Poisson Pressure Solver cloverleaf: Lagrangian-Eulerian Hydrodynamics dolfyn: Computational Fluid Dynamics gromacs: Water Benchmark lammps: 20k Atoms lammps: Rhodopsin Protein npb: EP.C npb: EP.D npb: LU.C rodinia: OpenMP LavaMD rodinia: OpenMP HotSpot3D rodinia: OpenMP Leukocyte rodinia: OpenMP CFD Solver rodinia: OpenMP Streamcluster namd: ATPase Simulation - 327,506 Atoms pennant: sedovbig pennant: leblancbig lulesh: nwchem: C240 Buckyball openfoam: Motorbike 30M openfoam: Motorbike 60M qmcpack: simple-H2O incompact3d: Cylinder minife: Small qe: AUSURF112 cp2k: Fayalite-FIST Data 1 2 3 96.388 7.379 58.487 5210.610211 125.73 13.439 1.257 10.613 10.427 1477.46 1460.31 27079.43 129.657 67.111 71.722 12.811 21.864 1.29398 2997.286 2871.307 5197.4336 11086 97.53 1273.46 21.255 227.760890 4290.68 1263.97 779.646 96.555 7.493 58.441 5245.240992 129.22 13.155 1.256 10.552 10.604 1478.90 1465.57 27412.76 129.805 67.630 71.574 12.811 21.810 1.29027 2997.151 2872.605 5248.0915 10958.2 98.15 1274.96 21.266 226.847718 4298.13 1261.63 772.101 129.12 13.447 1475.47 1458.77 27320.83 129.632 62.020 71.648 12.790 21.822 1.29520 2999.999 4285.50 764.575 OpenBenchmarking.org
Timed HMMer Search Pfam Database Search OpenBenchmarking.org Seconds, Fewer Is Better Timed HMMer Search 3.3.1 Pfam Database Search 1 2 20 40 60 80 100 SE +/- 0.11, N = 3 SE +/- 0.07, N = 3 96.39 96.56 1. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm
Timed MAFFT Alignment Multiple Sequence Alignment - LSU RNA OpenBenchmarking.org Seconds, Fewer Is Better Timed MAFFT Alignment 7.471 Multiple Sequence Alignment - LSU RNA 1 2 2 4 6 8 10 SE +/- 0.062, N = 3 SE +/- 0.024, N = 3 7.379 7.493 1. (CC) gcc options: -std=c99 -O3 -lm -lpthread
Timed MrBayes Analysis Primate Phylogeny Analysis OpenBenchmarking.org Seconds, Fewer Is Better Timed MrBayes Analysis 3.2.7 Primate Phylogeny Analysis 2 1 13 26 39 52 65 SE +/- 0.15, N = 3 SE +/- 0.12, N = 3 58.44 58.49 1. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm
Himeno Benchmark Poisson Pressure Solver OpenBenchmarking.org MFLOPS, More Is Better Himeno Benchmark 3.0 Poisson Pressure Solver 2 1 1100 2200 3300 4400 5500 SE +/- 75.41, N = 15 SE +/- 79.28, N = 15 5245.24 5210.61 1. (CC) gcc options: -O3 -mavx2
CloverLeaf Lagrangian-Eulerian Hydrodynamics OpenBenchmarking.org Seconds, Fewer Is Better CloverLeaf Lagrangian-Eulerian Hydrodynamics 1 3 2 30 60 90 120 150 SE +/- 0.44, N = 3 SE +/- 0.24, N = 3 SE +/- 0.20, N = 3 125.73 129.12 129.22 1. (F9X) gfortran options: -O3 -march=native -funroll-loops -fopenmp
Dolfyn Computational Fluid Dynamics OpenBenchmarking.org Seconds, Fewer Is Better Dolfyn 0.527 Computational Fluid Dynamics 2 1 3 3 6 9 12 15 SE +/- 0.05, N = 3 SE +/- 0.05, N = 3 SE +/- 0.16, N = 3 13.16 13.44 13.45
GROMACS Water Benchmark OpenBenchmarking.org Ns Per Day, More Is Better GROMACS 2020.3 Water Benchmark 1 2 0.2828 0.5656 0.8484 1.1312 1.414 SE +/- 0.000, N = 3 SE +/- 0.002, N = 3 1.257 1.256 1. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm
LAMMPS Molecular Dynamics Simulator Model: 20k Atoms OpenBenchmarking.org ns/day, More Is Better LAMMPS Molecular Dynamics Simulator 29Oct2020 Model: 20k Atoms 1 2 3 6 9 12 15 SE +/- 0.06, N = 3 SE +/- 0.01, N = 3 10.61 10.55 1. (CXX) g++ options: -O3 -pthread -lm
LAMMPS Molecular Dynamics Simulator Model: Rhodopsin Protein OpenBenchmarking.org ns/day, More Is Better LAMMPS Molecular Dynamics Simulator 29Oct2020 Model: Rhodopsin Protein 2 1 3 6 9 12 15 SE +/- 0.12, N = 4 SE +/- 0.07, N = 15 10.60 10.43 1. (CXX) g++ options: -O3 -pthread -lm
NAS Parallel Benchmarks Test / Class: EP.C OpenBenchmarking.org Total Mop/s, More Is Better NAS Parallel Benchmarks 3.4 Test / Class: EP.C 2 1 3 300 600 900 1200 1500 SE +/- 3.50, N = 3 SE +/- 2.77, N = 3 SE +/- 3.14, N = 3 1478.90 1477.46 1475.47 1. (F9X) gfortran options: -O3 -march=native -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz 2. Open MPI 4.0.3
NAS Parallel Benchmarks Test / Class: EP.D OpenBenchmarking.org Total Mop/s, More Is Better NAS Parallel Benchmarks 3.4 Test / Class: EP.D 2 1 3 300 600 900 1200 1500 SE +/- 3.58, N = 3 SE +/- 4.03, N = 3 SE +/- 10.15, N = 3 1465.57 1460.31 1458.77 1. (F9X) gfortran options: -O3 -march=native -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz 2. Open MPI 4.0.3
NAS Parallel Benchmarks Test / Class: LU.C OpenBenchmarking.org Total Mop/s, More Is Better NAS Parallel Benchmarks 3.4 Test / Class: LU.C 2 3 1 6K 12K 18K 24K 30K SE +/- 29.40, N = 3 SE +/- 40.05, N = 3 SE +/- 51.45, N = 3 27412.76 27320.83 27079.43 1. (F9X) gfortran options: -O3 -march=native -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz 2. Open MPI 4.0.3
Rodinia Test: OpenMP LavaMD OpenBenchmarking.org Seconds, Fewer Is Better Rodinia 3.1 Test: OpenMP LavaMD 3 1 2 30 60 90 120 150 SE +/- 0.05, N = 3 SE +/- 0.13, N = 3 SE +/- 0.06, N = 3 129.63 129.66 129.81 1. (CXX) g++ options: -O2 -lOpenCL
Rodinia Test: OpenMP HotSpot3D OpenBenchmarking.org Seconds, Fewer Is Better Rodinia 3.1 Test: OpenMP HotSpot3D 3 1 2 15 30 45 60 75 SE +/- 0.35, N = 3 SE +/- 1.56, N = 15 SE +/- 1.15, N = 15 62.02 67.11 67.63 1. (CXX) g++ options: -O2 -lOpenCL
Rodinia Test: OpenMP Leukocyte OpenBenchmarking.org Seconds, Fewer Is Better Rodinia 3.1 Test: OpenMP Leukocyte 2 3 1 16 32 48 64 80 SE +/- 0.20, N = 3 SE +/- 0.29, N = 3 SE +/- 0.32, N = 3 71.57 71.65 71.72 1. (CXX) g++ options: -O2 -lOpenCL
Rodinia Test: OpenMP CFD Solver OpenBenchmarking.org Seconds, Fewer Is Better Rodinia 3.1 Test: OpenMP CFD Solver 3 1 2 3 6 9 12 15 SE +/- 0.03, N = 3 SE +/- 0.03, N = 3 SE +/- 0.03, N = 3 12.79 12.81 12.81 1. (CXX) g++ options: -O2 -lOpenCL
Rodinia Test: OpenMP Streamcluster OpenBenchmarking.org Seconds, Fewer Is Better Rodinia 3.1 Test: OpenMP Streamcluster 2 3 1 5 10 15 20 25 SE +/- 0.02, N = 3 SE +/- 0.00, N = 3 SE +/- 0.16, N = 3 21.81 21.82 21.86 1. (CXX) g++ options: -O2 -lOpenCL
NAMD ATPase Simulation - 327,506 Atoms OpenBenchmarking.org days/ns, Fewer Is Better NAMD 2.14 ATPase Simulation - 327,506 Atoms 2 1 3 0.2914 0.5828 0.8742 1.1656 1.457 SE +/- 0.00110, N = 3 SE +/- 0.00369, N = 3 SE +/- 0.00373, N = 3 1.29027 1.29398 1.29520
Pennant Test: sedovbig OpenBenchmarking.org Hydro Cycle Time - Seconds, Fewer Is Better Pennant 1.0.1 Test: sedovbig 2 1 3 600 1200 1800 2400 3000 SE +/- 0.44, N = 3 SE +/- 0.38, N = 3 SE +/- 0.58, N = 3 2997.15 2997.29 3000.00 1. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi
Pennant Test: leblancbig OpenBenchmarking.org Hydro Cycle Time - Seconds, Fewer Is Better Pennant 1.0.1 Test: leblancbig 1 2 600 1200 1800 2400 3000 SE +/- 0.47, N = 3 SE +/- 0.51, N = 3 2871.31 2872.61 1. (CXX) g++ options: -fopenmp -pthread -lmpi_cxx -lmpi
LULESH OpenBenchmarking.org z/s, More Is Better LULESH 2.0.3 2 1 1100 2200 3300 4400 5500 SE +/- 25.04, N = 3 SE +/- 39.49, N = 3 5248.09 5197.43 1. (CXX) g++ options: -O3 -fopenmp -lm -pthread -lmpi_cxx -lmpi
NWChem Input: C240 Buckyball OpenBenchmarking.org Seconds, Fewer Is Better NWChem 7.0 Input: C240 Buckyball 2 1 2K 4K 6K 8K 10K 10958.2 11086.0 1. (F9X) gfortran options: -lnwctask -lccsd -lmcscf -lselci -lmp2 -lmoints -lstepper -ldriver -loptim -lnwdft -lgradients -lcphf -lesp -lddscf -ldangchang -lguess -lhessian -lvib -lnwcutil -lrimp2 -lproperty -lsolvation -lnwints -lprepar -lnwmd -lnwpw -lofpw -lpaw -lpspw -lband -lnwpwlib -lcafe -lspace -lanalyze -lqhop -lpfft -ldplot -ldrdy -lvscf -lqmmm -lqmd -letrans -ltce -lbq -lmm -lcons -lperfm -ldntmc -lccca -ldimqm -lga -larmci -lpeigs -l64to32 -lopenblas -lpthread -lrt -llapack -lnwcblas -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lz -lcomex -m64 -ffast-math -std=legacy -fdefault-integer-8 -finline-functions -O2
OpenFOAM Input: Motorbike 30M OpenBenchmarking.org Seconds, Fewer Is Better OpenFOAM 8 Input: Motorbike 30M 1 2 20 40 60 80 100 SE +/- 0.11, N = 3 SE +/- 0.14, N = 3 97.53 98.15 1. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm
OpenFOAM Input: Motorbike 60M OpenBenchmarking.org Seconds, Fewer Is Better OpenFOAM 8 Input: Motorbike 60M 1 2 300 600 900 1200 1500 SE +/- 0.39, N = 3 SE +/- 0.48, N = 3 1273.46 1274.96 1. (CXX) g++ options: -std=c++11 -m64 -O3 -ftemplate-depth-100 -fPIC -fuse-ld=bfd -Xlinker --add-needed --no-as-needed -lfoamToVTK -ldynamicMesh -llagrangian -lgenericPatchFields -lfileFormats -lOpenFOAM -ldl -lm
QMCPACK Input: simple-H2O OpenBenchmarking.org Total Execution Time - Seconds, Fewer Is Better QMCPACK 3.10 Input: simple-H2O 1 2 5 10 15 20 25 SE +/- 0.17, N = 3 SE +/- 0.12, N = 3 21.26 21.27 1. (CXX) g++ options: -fopenmp -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -fomit-frame-pointer -ffast-math -pthread -lm
Incompact3D Input: Cylinder OpenBenchmarking.org Seconds, Fewer Is Better Incompact3D 2020-09-17 Input: Cylinder 2 1 50 100 150 200 250 SE +/- 2.49, N = 4 SE +/- 2.70, N = 3 226.85 227.76 1. (F9X) gfortran options: -cpp -funroll-loops -floop-optimize -fcray-pointer -fbacktrace -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz
miniFE Problem Size: Small OpenBenchmarking.org CG Mflops, More Is Better miniFE 2.2 Problem Size: Small 2 1 3 900 1800 2700 3600 4500 SE +/- 0.62, N = 3 SE +/- 11.60, N = 3 SE +/- 11.25, N = 3 4298.13 4290.68 4285.50 1. (CXX) g++ options: -O3 -fopenmp -pthread -lmpi_cxx -lmpi
Quantum ESPRESSO Input: AUSURF112 OpenBenchmarking.org Seconds, Fewer Is Better Quantum ESPRESSO 6.7 Input: AUSURF112 2 1 300 600 900 1200 1500 SE +/- 2.61, N = 3 SE +/- 1.65, N = 3 1261.63 1263.97 1. (F9X) gfortran options: -lopenblas -lFoX_dom -lFoX_sax -lFoX_wxml -lFoX_common -lFoX_utils -lFoX_fsys -lfftw3 -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -ldl -levent -levent_pthreads -lutil -lm -lrt -lz
CP2K Molecular Dynamics Fayalite-FIST Data OpenBenchmarking.org Seconds, Fewer Is Better CP2K Molecular Dynamics 8.1 Fayalite-FIST Data 3 2 1 200 400 600 800 1000 764.58 772.10 779.65
Phoronix Test Suite v10.8.4