8280 x 2 Linux

2 x Intel Xeon Platinum 8280 testing with a GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS) and llvmpipe on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009309-FI-8280X2LIN01
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Bioinformatics 2 Tests
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September 29 2020
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8280 x 2 LinuxProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution1232 x Intel Xeon Platinum 8280 @ 4.00GHz (56 Cores / 112 Threads)GIGABYTE MD61-SC2-00 v01000100 (T15 BIOS)Intel Sky Lake-E DMI3 Registers378GB280GB INTEL SSDPED1D280GAllvmpipeVE2282 x Intel X722 for 1GbE + 2 x QLogic FastLinQ QL41000 10/25/40/50GbEUbuntu 20.045.9.0-050900rc4daily20200912-generic (x86_64) 20200911GNOME Shell 3.36.1X Server 1.20.8modesetting 1.20.83.3 Mesa 20.0.4 (LLVM 9.0.1 256 bits)GCC 9.3.0ext41920x1080OpenBenchmarking.orgCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: intel_pstate powersave - CPU Microcode: 0x500002cPython Details- Python 3.8.2Security Details- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

123Result OverviewPhoronix Test Suite 10.6.0100%101%102%103%103%Mlpack BenchmarkKeyDBFFTETimed MAFFT AlignmentLeelaChessZeroGROMACSHierarchical INTegrationTimed HMMer SearchBYTE Unix BenchmarkApache CouchDBDolfyn

8280 x 2 Linuxlczero: BLASlczero: Eigenlczero: Randdolfyn: Computational Fluid Dynamicsffte: N=256, 3D Complex FFT Routinehmmer: Pfam Database Searchmafft: Multiple Sequence Alignment - LSU RNAbyte: Dhrystone 2couchdb: 100 - 1000 - 24keydb: gromacs: Water Benchmarkcaffe: AlexNet - CPU - 100caffe: AlexNet - CPU - 200caffe: AlexNet - CPU - 1000caffe: GoogleNet - CPU - 100caffe: GoogleNet - CPU - 200caffe: GoogleNet - CPU - 1000hint: FLOATmlpack: scikit_ica1233664282115387121.648159030.11967497227.16211.73639280960.9222.068457937.605.74546014941224412321450522809291556637394009468.7720259.033660279815268121.650157567.46820488226.21511.77639427885.3222.627446094.485.734393723672.0087860.443740272415396221.698159827.00564388226.63011.86239431866.5222.605445160.285.713395871685.8782258.44OpenBenchmarking.org

LeelaChessZero

LeelaChessZero (lc0 / lczero) is a chess engine automated vian neural networks. This test profile can be used for OpenCL, CUDA + cuDNN, and BLAS (CPU-based) benchmarking. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: BLAS1238001600240032004000SE +/- 75.44, N = 9SE +/- 49.64, N = 9SE +/- 69.21, N = 93664366037401. (CXX) g++ options: -flto -pthread
OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: BLAS1237001400210028003500Min: 3270 / Avg: 3664.22 / Max: 4035Min: 3517 / Avg: 3660 / Max: 3895Min: 3513 / Avg: 3740.44 / Max: 39791. (CXX) g++ options: -flto -pthread

OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: Eigen1236001200180024003000SE +/- 66.75, N = 6SE +/- 48.71, N = 9SE +/- 30.67, N = 92821279827241. (CXX) g++ options: -flto -pthread
OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: Eigen1235001000150020002500Min: 2676 / Avg: 2821 / Max: 3118Min: 2570 / Avg: 2797.67 / Max: 3031Min: 2587 / Avg: 2724.33 / Max: 29011. (CXX) g++ options: -flto -pthread

OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: Random12330K60K90K120K150KSE +/- 394.56, N = 3SE +/- 358.39, N = 3SE +/- 75.29, N = 31538711526811539621. (CXX) g++ options: -flto -pthread
OpenBenchmarking.orgNodes Per Second, More Is BetterLeelaChessZero 0.26Backend: Random12330K60K90K120K150KMin: 153145 / Avg: 153870.67 / Max: 154502Min: 151964 / Avg: 152680.67 / Max: 153050Min: 153821 / Avg: 153962.33 / Max: 1540781. (CXX) g++ options: -flto -pthread

Dolfyn

Dolfyn is a Computational Fluid Dynamics (CFD) code of modern numerical simulation techniques. The Dolfyn test profile measures the execution time of the bundled computational fluid dynamics demos that are bundled with Dolfyn. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics123510152025SE +/- 0.02, N = 3SE +/- 0.02, N = 3SE +/- 0.03, N = 321.6521.6521.70
OpenBenchmarking.orgSeconds, Fewer Is BetterDolfyn 0.527Computational Fluid Dynamics123510152025Min: 21.61 / Avg: 21.65 / Max: 21.68Min: 21.62 / Avg: 21.65 / Max: 21.68Min: 21.63 / Avg: 21.7 / Max: 21.74

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 7.0N=256, 3D Complex FFT Routine12330K60K90K120K150KSE +/- 569.00, N = 3SE +/- 1463.17, N = 3SE +/- 1060.14, N = 3159030.12157567.47159827.011. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp
OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 7.0N=256, 3D Complex FFT Routine12330K60K90K120K150KMin: 157968.53 / Avg: 159030.12 / Max: 159915.98Min: 154849.34 / Avg: 157567.47 / Max: 159865.36Min: 158120.95 / Avg: 159827.01 / Max: 161770.341. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search12350100150200250SE +/- 0.33, N = 3SE +/- 0.38, N = 3SE +/- 0.61, N = 3227.16226.22226.631. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search1234080120160200Min: 226.66 / Avg: 227.16 / Max: 227.78Min: 225.79 / Avg: 226.22 / Max: 226.98Min: 225.99 / Avg: 226.63 / Max: 227.851. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA1233691215SE +/- 0.20, N = 3SE +/- 0.15, N = 4SE +/- 0.11, N = 311.7411.7811.861. (CC) gcc options: -std=c99 -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNA1233691215Min: 11.51 / Avg: 11.74 / Max: 12.14Min: 11.37 / Avg: 11.78 / Max: 12.02Min: 11.65 / Avg: 11.86 / Max: 11.981. (CC) gcc options: -std=c99 -O3 -lm -lpthread

BYTE Unix Benchmark

This is a test of BYTE. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Computational Test: Dhrystone 21238M16M24M32M40MSE +/- 237758.93, N = 3SE +/- 74942.21, N = 3SE +/- 36240.25, N = 339280960.939427885.339431866.5
OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Computational Test: Dhrystone 21237M14M21M28M35MMin: 38808272 / Avg: 39280960.87 / Max: 39562159Min: 39321193.4 / Avg: 39427885.3 / Max: 39572399.4Min: 39391458.2 / Avg: 39431866.53 / Max: 39504180.6

Apache CouchDB

This is a bulk insertion benchmark of Apache CouchDB. CouchDB is a document-oriented NoSQL database implemented in Erlang. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterApache CouchDB 3.1.1Bulk Size: 100 - Inserts: 1000 - Rounds: 2412350100150200250SE +/- 0.02, N = 3SE +/- 0.81, N = 3SE +/- 0.24, N = 3222.07222.63222.611. (CXX) g++ options: -std=c++14 -lmozjs-68 -lm -lerl_interface -lei -fPIC -MMD
OpenBenchmarking.orgSeconds, Fewer Is BetterApache CouchDB 3.1.1Bulk Size: 100 - Inserts: 1000 - Rounds: 241234080120160200Min: 222.04 / Avg: 222.07 / Max: 222.11Min: 221.62 / Avg: 222.63 / Max: 224.23Min: 222.17 / Avg: 222.61 / Max: 2231. (CXX) g++ options: -std=c++14 -lmozjs-68 -lm -lerl_interface -lei -fPIC -MMD

KeyDB

A benchmark of KeyDB as a multi-threaded fork of the Redis server. The KeyDB benchmark is conducted using memtier-benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgOps/sec, More Is BetterKeyDB 6.0.16123100K200K300K400K500KSE +/- 4889.71, N = 7SE +/- 4040.21, N = 15SE +/- 4139.14, N = 3457937.60446094.48445160.281. (CXX) g++ options: -O2 -levent_openssl -levent -lcrypto -lssl -lpthread -lz -lpcre
OpenBenchmarking.orgOps/sec, More Is BetterKeyDB 6.0.1612380K160K240K320K400KMin: 434407.47 / Avg: 457937.6 / Max: 471008.95Min: 422719.31 / Avg: 446094.48 / Max: 471868.73Min: 438159.89 / Avg: 445160.28 / Max: 452487.131. (CXX) g++ options: -O2 -levent_openssl -levent -lcrypto -lssl -lpthread -lz -lpcre

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.3Water Benchmark1231.29262.58523.87785.17046.463SE +/- 0.013, N = 3SE +/- 0.010, N = 3SE +/- 0.012, N = 35.7455.7345.7131. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm
OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.3Water Benchmark123246810Min: 5.72 / Avg: 5.75 / Max: 5.76Min: 5.72 / Avg: 5.73 / Max: 5.75Min: 5.69 / Avg: 5.71 / Max: 5.731. (CXX) g++ options: -O3 -pthread -lrt -lpthread -lm

Caffe

This is a benchmark of the Caffe deep learning framework and currently supports the AlexNet and Googlenet model and execution on both CPUs and NVIDIA GPUs. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: AlexNet - Acceleration: CPU - Iterations: 100110K20K30K40K50KSE +/- 1510.44, N = 15460141. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: AlexNet - Acceleration: CPU - Iterations: 200120K40K60K80K100KSE +/- 3700.54, N = 15941221. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: AlexNet - Acceleration: CPU - Iterations: 1000190K180K270K360K450KSE +/- 20434.41, N = 94412321. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: GoogleNet - Acceleration: CPU - Iterations: 100130K60K90K120K150KSE +/- 6922.46, N = 91450521. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: GoogleNet - Acceleration: CPU - Iterations: 200160K120K180K240K300KSE +/- 11842.91, N = 92809291. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

OpenBenchmarking.orgMilli-Seconds, Fewer Is BetterCaffe 2020-02-13Model: GoogleNet - Acceleration: CPU - Iterations: 10001300K600K900K1200K1500KSE +/- 63446.08, N = 915566371. (CXX) g++ options: -fPIC -O3 -rdynamic -lglog -lgflags -lprotobuf -lpthread -lsz -lz -ldl -lm -llmdb -lopenblas

Hierarchical INTegration

This test runs the U.S. Department of Energy's Ames Laboratory Hierarchical INTegration (HINT) benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgQUIPs, More Is BetterHierarchical INTegration 1.0Test: FLOAT12380M160M240M320M400MSE +/- 417575.88, N = 3SE +/- 1298927.84, N = 3SE +/- 1081523.90, N = 3394009468.77393723672.01395871685.881. (CC) gcc options: -O3 -march=native -lm
OpenBenchmarking.orgQUIPs, More Is BetterHierarchical INTegration 1.0Test: FLOAT12370M140M210M280M350MMin: 393350568.38 / Avg: 394009468.77 / Max: 394783324.8Min: 392079376.54 / Avg: 393723672.01 / Max: 396287617.64Min: 393849182.25 / Avg: 395871685.88 / Max: 397547159.91. (CC) gcc options: -O3 -march=native -lm

Mlpack Benchmark

Mlpack benchmark scripts for machine learning libraries Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_ica1231428425670SE +/- 0.53, N = 3SE +/- 0.21, N = 3SE +/- 0.12, N = 359.0360.4458.44
OpenBenchmarking.orgSeconds, Fewer Is BetterMlpack BenchmarkBenchmark: scikit_ica1231224364860Min: 58.28 / Avg: 59.03 / Max: 60.06Min: 60.02 / Avg: 60.44 / Max: 60.65Min: 58.25 / Avg: 58.44 / Max: 58.67