mpimg-dell-optiplex-5055-bioninformatics

AMD Ryzen 5 PRO 1500 testing with a Dell 0P03DX (1.1.20 BIOS) and AMD Radeon HD 8570 / R7 240/340 OEM 2GB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2006240-NI-MPIMGDELL17
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Date
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  Test
  Duration
AMD Ryzen 5 PRO 1500
June 24 2020
  17 Minutes
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AMD Ryzen 5 PRO 1500

Processor: AMD Ryzen 5 PRO 1500 @ 3.50GHz (4 Cores / 8 Threads), Motherboard: Dell 0P03DX (1.1.20 BIOS), Chipset: AMD 17h, Memory: 16GB, Disk: 500GB TOSHIBA MQ01ACF0, Graphics: AMD Radeon HD 8570 / R7 240/340 OEM 2GB, Audio: AMD Cape Verde/Pitcairn, Monitor: DELL U2412M, Network: Broadcom NetXtreme BCM5762 PCIe

OS: Ubuntu 18.04, Kernel: 5.3.0-59-generic (x86_64), Desktop: GNOME Shell 3.28.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.5 Mesa 19.2.8 (LLVM 9.0.0), Compiler: GCC 7.5.0, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

mpimg-dell-optiplex-5055-bioninformaticsOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 5 PRO 1500 @ 3.50GHz (4 Cores / 8 Threads)Dell 0P03DX (1.1.20 BIOS)AMD 17h16GB500GB TOSHIBA MQ01ACF0AMD Radeon HD 8570 / R7 240/340 OEM 2GBAMD Cape Verde/PitcairnDELL U2412MBroadcom NetXtreme BCM5762 PCIeUbuntu 18.045.3.0-59-generic (x86_64)GNOME Shell 3.28.4X Server 1.20.8modesetting 1.20.84.5 Mesa 19.2.8 (LLVM 9.0.0)GCC 7.5.0ext41920x1200ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionMpimg-dell-optiplex-5055-bioninformatics PerformanceSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

mpimg-dell-optiplex-5055-bioninformaticsmrbayes: Primate Phylogeny Analysisqmcpack: hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmenthimeno: Poisson Pressure SolverAMD Ryzen 5 PRO 1500162.740257.459.9904.7383083.321393OpenBenchmarking.org

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.2.7Primate Phylogeny AnalysisAMD Ryzen 5 PRO 15004080120160200SE +/- 0.48, N = 3162.741. (CC) gcc options: -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -msse4.2 -msse4a -msha -maes -mavx -mfma -mavx2 -mrdrnd -mbmi -mbmi2 -madx -mabm -O3 -std=c99 -pedantic -lm

QMCPACK

QMCPACK is a modern high-performance open-source Quantum Monte Carlo (QMC) simulation code making use of MPI for this benchmark of the H20 example code. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgTotal Execution Time - Seconds, Fewer Is BetterQMCPACK 3.8AMD Ryzen 5 PRO 150060120180240300257.451. (CXX) g++ options: -fopenmp -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops -march=native -O3 -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database SearchAMD Ryzen 5 PRO 15003691215SE +/- 0.073, N = 39.9901. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence AlignmentAMD Ryzen 5 PRO 15001.06612.13223.19834.26445.3305SE +/- 0.084, N = 124.7381. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure SolverAMD Ryzen 5 PRO 15007001400210028003500SE +/- 21.32, N = 33083.321. (CC) gcc options: -O3 -mavx2

AMD Ryzen 5 PRO 1500

Processor: AMD Ryzen 5 PRO 1500 @ 3.50GHz (4 Cores / 8 Threads), Motherboard: Dell 0P03DX (1.1.20 BIOS), Chipset: AMD 17h, Memory: 16GB, Disk: 500GB TOSHIBA MQ01ACF0, Graphics: AMD Radeon HD 8570 / R7 240/340 OEM 2GB, Audio: AMD Cape Verde/Pitcairn, Monitor: DELL U2412M, Network: Broadcom NetXtreme BCM5762 PCIe

OS: Ubuntu 18.04, Kernel: 5.3.0-59-generic (x86_64), Desktop: GNOME Shell 3.28.4, Display Server: X Server 1.20.8, Display Driver: modesetting 1.20.8, OpenGL: 4.5 Mesa 19.2.8 (LLVM 9.0.0), Compiler: GCC 7.5.0, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8001137
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 24 June 2020 16:36 by user molgen.