scientific-wsp6000-08012019-1731

2 x Intel Xeon E5-2690 v4 testing with a ASUS Z10PE-D8 WS (3407 BIOS) and NVIDIA Quadro P6000 24GB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1901097-SK-SCIENTIFI83
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scientific-wsp6000-08012019-1731
January 08 2019
  1 Hour, 22 Minutes
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scientific-wsp6000-08012019-1731

Processor: 2 x Intel Xeon E5-2690 v4 @ 3.50GHz (28 Cores / 56 Threads), Motherboard: ASUS Z10PE-D8 WS (3407 BIOS), Chipset: Intel Xeon E7 v4/Xeon, Memory: 64512MB, Disk: 512GB Samsung SSD 850 + Samsung SSD 960 PRO 512GB, Graphics: NVIDIA Quadro P6000 24GB (1506/4513MHz), Audio: Realtek ALC1150, Monitor: DELL S2817Q, Network: Intel I210 Gigabit Connection

OS: Ubuntu 18.04, Kernel: 4.15.0-42-generic (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.19.6, Display Driver: NVIDIA 410.48, OpenGL: 4.6.0, Compiler: GCC 7.3.0 + CUDA 10.0, File-System: ext4, Screen Resolution: 2560x1440

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance
Security Notes: KPTI + __user pointer sanitization + Full generic retpoline IBPB IBRS_FW + SSB disabled via prctl and seccomp + PTE Inversion; VMX: conditional cache flushes SMT vulnerable

scientific-wsp6000-08012019-1731OpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon E5-2690 v4 @ 3.50GHz (28 Cores / 56 Threads)ASUS Z10PE-D8 WS (3407 BIOS)Intel Xeon E7 v4/Xeon64512MB512GB Samsung SSD 850 + Samsung SSD 960 PRO 512GBNVIDIA Quadro P6000 24GB (1506/4513MHz)Realtek ALC1150DELL S2817QIntel I210 Gigabit ConnectionUbuntu 18.044.15.0-42-generic (x86_64)GNOME Shell 3.28.3X Server 1.19.6NVIDIA 410.484.6.0GCC 7.3.0 + CUDA 10.0ext42560x1440ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionScientific-wsp6000-08012019-1731 BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate performance- KPTI + __user pointer sanitization + Full generic retpoline IBPB IBRS_FW + SSB disabled via prctl and seccomp + PTE Inversion; VMX: conditional cache flushes SMT vulnerable

scientific-wsp6000-08012019-1731lammps: Rhodopsin Proteinffte: N=256, 1D Complex FFT Routinefftw: Stock - 1D FFT Size 32fftw: Stock - 1D FFT Size 64fftw: Stock - 2D FFT Size 32fftw: Stock - 2D FFT Size 64fftw: Stock - 1D FFT Size 128fftw: Stock - 1D FFT Size 256fftw: Stock - 1D FFT Size 512fftw: Stock - 2D FFT Size 128fftw: Stock - 2D FFT Size 256fftw: Stock - 2D FFT Size 512fftw: Stock - 1D FFT Size 1024fftw: Stock - 1D FFT Size 2048fftw: Stock - 1D FFT Size 4096fftw: Stock - 2D FFT Size 1024fftw: Stock - 2D FFT Size 2048fftw: Stock - 2D FFT Size 4096fftw: Float + SSE - 1D FFT Size 32fftw: Float + SSE - 1D FFT Size 64fftw: Float + SSE - 2D FFT Size 32fftw: Float + SSE - 2D FFT Size 64fftw: Float + SSE - 1D FFT Size 128fftw: Float + SSE - 1D FFT Size 256fftw: Float + SSE - 1D FFT Size 512fftw: Float + SSE - 2D FFT Size 128fftw: Float + SSE - 2D FFT Size 256fftw: Float + SSE - 2D FFT Size 512fftw: Float + SSE - 1D FFT Size 1024fftw: Float + SSE - 1D FFT Size 2048fftw: Float + SSE - 1D FFT Size 4096fftw: Float + SSE - 2D FFT Size 1024fftw: Float + SSE - 2D FFT Size 2048fftw: Float + SSE - 2D FFT Size 4096hmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentmrbayes: Primate Phylogeny Analysisscientific-wsp6000-08012019-173135.3955687333699874606415637763126390563254065426618357825766544544914157108131581825575258951798927917374552668024847254434191037382336012602219776149685.802.79137.42OpenBenchmarking.org

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLoop Time, Fewer Is BetterLAMMPS Molecular Dynamics Simulator 1.0Test: Rhodopsin Proteinscientific-wsp6000-08012019-1731816243240SE +/- 0.07, N = 335.391. (CXX) g++ options: -lfftw -lmpich

FFTE

FFTE is a package by Daisuke Takahashi to compute Discrete Fourier Transforms of 1-, 2- and 3- dimensional sequences of length (2^p)*(3^q)*(5^r). Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterFFTE 6.0Test: N=256, 1D Complex FFT Routinescientific-wsp6000-08012019-173112002400360048006000SE +/- 35.47, N = 355681. (F9X) gfortran options: -O3 -fomit-frame-pointer -fopenmp -pthread -lmpi_usempif08 -lmpi_mpifh -lmpi

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 32scientific-wsp6000-08012019-173116003200480064008000SE +/- 1.79, N = 373331. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 64scientific-wsp6000-08012019-173115003000450060007500SE +/- 97.26, N = 669981. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 32scientific-wsp6000-08012019-173116003200480064008000SE +/- 17.44, N = 374601. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 64scientific-wsp6000-08012019-173114002800420056007000SE +/- 20.53, N = 364151. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 128scientific-wsp6000-08012019-173114002800420056007000SE +/- 8.45, N = 363771. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 256scientific-wsp6000-08012019-173114002800420056007000SE +/- 3.70, N = 363121. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 512scientific-wsp6000-08012019-173114002800420056007000SE +/- 6.01, N = 363901. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 128scientific-wsp6000-08012019-173112002400360048006000SE +/- 59.93, N = 356321. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 256scientific-wsp6000-08012019-173112002400360048006000SE +/- 17.84, N = 354061. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 512scientific-wsp6000-08012019-173112002400360048006000SE +/- 33.40, N = 354261. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 1024scientific-wsp6000-08012019-173113002600390052006500SE +/- 9.71, N = 361831. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 2048scientific-wsp6000-08012019-173112002400360048006000SE +/- 88.71, N = 457821. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 1D FFT Size 4096scientific-wsp6000-08012019-173112002400360048006000SE +/- 15.40, N = 357661. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 1024scientific-wsp6000-08012019-173112002400360048006000SE +/- 16.36, N = 354451. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 2048scientific-wsp6000-08012019-173110002000300040005000SE +/- 16.48, N = 344911. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Stock - Size: 2D FFT Size 4096scientific-wsp6000-08012019-17319001800270036004500SE +/- 66.70, N = 341571. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 32scientific-wsp6000-08012019-17312K4K6K8K10KSE +/- 163.72, N = 3108131. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 64scientific-wsp6000-08012019-17313K6K9K12K15KSE +/- 40.34, N = 3158181. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 32scientific-wsp6000-08012019-17315K10K15K20K25K255751. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 64scientific-wsp6000-08012019-17316K12K18K24K30KSE +/- 162.45, N = 3258951. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 128scientific-wsp6000-08012019-17314K8K12K16K20KSE +/- 105.84, N = 3179891. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 256scientific-wsp6000-08012019-17316K12K18K24K30KSE +/- 493.10, N = 3279171. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 512scientific-wsp6000-08012019-17318K16K24K32K40KSE +/- 506.41, N = 3374551. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 128scientific-wsp6000-08012019-17316K12K18K24K30KSE +/- 111.18, N = 3266801. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 256scientific-wsp6000-08012019-17315K10K15K20K25KSE +/- 164.62, N = 3248471. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 512scientific-wsp6000-08012019-17315K10K15K20K25KSE +/- 81.39, N = 3254431. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 1024scientific-wsp6000-08012019-17319K18K27K36K45KSE +/- 459.63, N = 11419101. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 2048scientific-wsp6000-08012019-17318K16K24K32K40KSE +/- 274.09, N = 3373821. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 1D FFT Size 4096scientific-wsp6000-08012019-17317K14K21K28K35KSE +/- 517.58, N = 5336011. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 1024scientific-wsp6000-08012019-17316K12K18K24K30KSE +/- 410.74, N = 3260221. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 2048scientific-wsp6000-08012019-17314K8K12K16K20KSE +/- 690.16, N = 9197761. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

OpenBenchmarking.orgMflops, More Is BetterFFTW 3.3.6Build: Float + SSE - Size: 2D FFT Size 4096scientific-wsp6000-08012019-17313K6K9K12K15KSE +/- 118.38, N = 3149681. (CC) gcc options: -pthread -O3 -fomit-frame-pointer -mtune=native -malign-double -fstrict-aliasing -fno-schedule-insns -ffast-math -lm

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchscientific-wsp6000-08012019-17311.3052.613.9155.226.525SE +/- 0.01, N = 35.801. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentscientific-wsp6000-08012019-17310.62781.25561.88342.51123.139SE +/- 0.06, N = 122.791. (CC) gcc options: -std=c99 -O3 -lm -lpthread

Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisscientific-wsp6000-08012019-1731306090120150SE +/- 7.79, N = 9137.421. (CC) gcc options: -O3 -msse -mfpmath=sse -march=native -lm -pthread -lmpi

scientific-wsp6000-08012019-1731

Processor: 2 x Intel Xeon E5-2690 v4 @ 3.50GHz (28 Cores / 56 Threads), Motherboard: ASUS Z10PE-D8 WS (3407 BIOS), Chipset: Intel Xeon E7 v4/Xeon, Memory: 64512MB, Disk: 512GB Samsung SSD 850 + Samsung SSD 960 PRO 512GB, Graphics: NVIDIA Quadro P6000 24GB (1506/4513MHz), Audio: Realtek ALC1150, Monitor: DELL S2817Q, Network: Intel I210 Gigabit Connection

OS: Ubuntu 18.04, Kernel: 4.15.0-42-generic (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.19.6, Display Driver: NVIDIA 410.48, OpenGL: 4.6.0, Compiler: GCC 7.3.0 + CUDA 10.0, File-System: ext4, Screen Resolution: 2560x1440

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: intel_pstate performance
Security Notes: KPTI + __user pointer sanitization + Full generic retpoline IBPB IBRS_FW + SSB disabled via prctl and seccomp + PTE Inversion; VMX: conditional cache flushes SMT vulnerable

Testing initiated at 8 January 2019 17:31 by user ith-admin.