bioinf_tools

Intel Core i7-3540M testing with a Dell 0YRP01 and Intel 3rd Gen Core on LinuxMint 13 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1312081-AR-BIOINFTOO75
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bioinf_toolsOpenBenchmarking.orgPhoronix Test Suite 10.4.0Intel Core i7-3540M @ 3.00GHz (4 Cores)Dell 0YRP01Intel 3rd Gen Core DRAM8192MB500GB HGST HTS725050A7Intel 3rd Gen CoreIDT 92HD93BXXIntel 82579LM Gigabit Connection + Intel Centrino Ultimate-N 6300LinuxMint 133.2.0-23-generic (x86_64)X Server 1.11.3intel 2.17.02.1 Mesa 8.0.4GCC 4.6ext41366x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionBioinf_tools PerformanceSystem Logs- Firefox was running on this system.

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchbionf_tools_1510152025SE +/- 0.09, N = 321.71

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignmentbionf_tools_13691215SE +/- 0.30, N = 610.95

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysisbionf_tools_1612182430SE +/- 0.04, N = 323.35