ECP-CANDLE

The CANDLE benchmark codes implement deep learning architectures relevant to problems in cancer. These architectures address problems at different biological scales, specifically problems at the molecular, cellular and population scales.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark ecp-candle.

Source Repository

github.com

Test Created

12 August 2020

Last Updated

2 August 2021

Test Maintainer

Michael Larabel 

Test Type

System

Average Install Time

3 Minutes, 30 Seconds

Average Run Time

10 Minutes, 19 Seconds

Test Dependencies

Python

Accolades

10k+ Downloads

Supported Platforms


Public Result Uploads *Reported Installs **Reported Test Completions **Test Profile Page Views ***OpenBenchmarking.orgEventsECP-CANDLE Popularity Statisticspts/ecp-candle2020.082020.092020.102020.112020.122021.012021.022021.032021.042021.052021.062021.072021.082021.092021.102021.112021.122022.012022.022022.032022.042022.052022.06400800120016002000
* Uploading of benchmark result data to OpenBenchmarking.org is always optional (opt-in) via the Phoronix Test Suite for users wishing to share their results publicly.
** Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
*** Test profile page view reporting began March 2021.
Data current as of 1 July 2022.
P3B226.7%P3B132.7%P1B240.6%Benchmark Option PopularityOpenBenchmarking.org

Revision History

pts/ecp-candle-1.1.0   [View Source]   Mon, 02 Aug 2021 15:13:15 GMT
Update against ECP-CANDLE Benchmarks v0.4 upstream.

pts/ecp-candle-1.0.1   [View Source]   Sun, 23 Aug 2020 14:20:46 GMT
Drop P2B1 option as it seems borked for some systems.

pts/ecp-candle-1.0.0   [View Source]   Wed, 12 Aug 2020 18:15:02 GMT
Initial commit of CANDLE cancer deep learning benchmark.

Suites Using This Test

Machine Learning

HPC - High Performance Computing


Performance Metrics

Analyze Test Configuration:

ECP-CANDLE 0.4

Benchmark: P1B2

OpenBenchmarking.org metrics for this test profile configuration based on 217 public results since 2 August 2021 with the latest data as of 28 April 2022.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Compatible Public Results
Seconds (Average)
87th
12
30 +/- 3
Mid-Tier
75th
> 32
Median
50th
38
49th
3
38 +/- 1
47th
6
39 +/- 2
Low-Tier
25th
> 45
24th
4
45 +/- 1
23rd
3
46 +/- 1
17th
3
47 +/- 1
16th
4
48 +/- 1
OpenBenchmarking.orgDistribution Of Public Results - Benchmark: P1B2217 Results Range From 20 To 358 Seconds2038567492110128146164182200218236254272290308326344362306090120150

Based on OpenBenchmarking.org data, the selected test / test configuration (ECP-CANDLE 0.4 - Benchmark: P1B2) has an average run-time of 2 minutes. By default this test profile is set to run at least 1 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkBenchmark: P1B2Run-Time246810Min: 1 / Avg: 1.01 / Max: 2

Does It Scale Well With Increasing Cores?

No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.

IntelAMDOpenBenchmarking.orgRelative Core Scaling To BaseECP-CANDLE CPU Core ScalingBenchmark: P1B246832641280.41880.83761.25641.67522.094

Tested CPU Architectures

This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.

CPU Architecture
Kernel Identifier
Verified On
Intel / AMD x86 64-bit
x86_64
(Many Processors)

Recent Test Results

OpenBenchmarking.org Results Compare

3 Systems - 19 Benchmark Results

AMD Ryzen 7 5800X3D 8-Core - ASRock X570 Pro4 - AMD Starship

Ubuntu 22.04 - 5.18.0-051800rc2daily20220411-generic - GNOME Shell 42.0

1 System - 120 Benchmark Results

AMD Ryzen 7 3700X 8-Core - ASUS ROG STRIX X570-E GAMING - AMD Starship

Ubuntu 20.04 - 5.4.0-104-generic - GNOME Shell 3.36.9

1 System - 125 Benchmark Results

AMD Ryzen 9 5900HX - System76 Kudu - AMD Renoir

Pop 21.10 - 5.15.15-76051515-generic - GNOME Shell 40.5

1 System - 115 Benchmark Results

AMD Ryzen 9 5900HX - System76 Kudu - AMD Renoir

Pop 21.10 - 5.15.15-76051515-generic - GNOME Shell 40.5

3 Systems - 213 Benchmark Results

Intel Core i5-6500 - Gigabyte Z170M-D3H-CF - Intel Xeon E3-1200 v5

Ubuntu 20.04 - 5.9.0-050900rc7daily20200929-generic - GNOME Shell 3.36.4

4 Systems - 153 Benchmark Results

3 Systems - 241 Benchmark Results

Intel Xeon E5-2609 v4 - MSI X99A RAIDER - Intel Xeon E7 v4

Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.2

2 Systems - 169 Benchmark Results

1 System - 169 Benchmark Results

3 Systems - 261 Benchmark Results

AMD Ryzen Threadripper 2990WX 32-Core - ASUS ROG ZENITH EXTREME - AMD 17h

Ubuntu 20.10 - 5.8.0-50-generic - GNOME Shell 3.38.1

3 Systems - 203 Benchmark Results

Intel Core i7-8086K - ASUS PRIME Z370-A - Intel 8th Gen Core

Ubuntu 20.04 - 5.9.0-050900rc8daily20201009-generic - GNOME Shell 3.36.4

8 Systems - 364 Benchmark Results

2 x AMD EPYC 7742 64-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 21.10 - 5.13.0-19-generic - GNOME Shell 40.5

1 System - 495 Benchmark Results

AMD EPYC 75F3 32-Core - ASRockRack ROME2D16-2T - AMD Starship

Ubuntu 21.10 - 5.13.0-19-generic - GNOME Shell 40.5

Most Popular Test Results

OpenBenchmarking.org Results Compare

4 Systems - 196 Benchmark Results

Intel Core i7-8700K - ASUS TUF Z370-PLUS GAMING - Intel 8th Gen Core

Ubuntu 20.04 - 5.9.0-050900rc6daily20200923-generic - GNOME Shell 3.36.4

5 Systems - 34 Benchmark Results

2 x AMD EPYC 7763 64-Core - AMD DAYTONA_X - AMD Starship

Debian 11 - 5.10.0-8-amd64 - GNOME Shell 3.38.4

4 Systems - 146 Benchmark Results

Intel Core i5-7600K - Gigabyte Z270M-D3H-CF - Intel Xeon E3-1200 v6

Ubuntu 20.04 - 5.9.0-050900rc7daily20200928-generic - GNOME Shell 3.36.4

3 Systems - 68 Benchmark Results

Intel Xeon E3-1275 v6 - ASUS P10S-M WS - Intel Xeon E3-1200 v6

Ubuntu 20.04 - 5.9.0-050900rc8daily20201007-generic - X Server 1.20.8

8 Systems - 364 Benchmark Results

AMD EPYC 7742 64-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 21.10 - 5.13.0-19-generic - GNOME Shell 40.5

4 Systems - 75 Benchmark Results

AMD FX-8150 Eight-Core - ASUS M5A78L-M LX PLUS - AMD RS780 + SB7x0

Ubuntu 20.10 - 5.8.0-53-generic - GNOME Shell 3.38.1

4 Systems - 63 Benchmark Results

AMD Ryzen 9 3900XT 12-Core - MSI MEG X570 GODLIKE - AMD Starship

Ubuntu 20.10 - 5.11.0-rc1-phx - GNOME Shell 3.38.1

5 Systems - 27 Benchmark Results

2 x Intel Xeon Platinum 8380 - Intel M50CYP2SB2U - Intel Device 0998

Ubuntu 20.04 - 5.14.0-rc1-folio - GNOME Shell 3.36.4

3 Systems - 55 Benchmark Results

2 x AMD EPYC 7763 64-Core - AMD DAYTONA_X - AMD Starship

Ubuntu 20.10 - 5.8.0-29-generic - X Server 1.20.8

3 Systems - 261 Benchmark Results

AMD Ryzen Threadripper 2990WX 32-Core - ASUS ROG ZENITH EXTREME - AMD 17h

Ubuntu 20.10 - 5.8.0-50-generic - GNOME Shell 3.38.1

3 Systems - 22 Benchmark Results

Intel Core i5-10600K - ASUS PRIME Z490M-PLUS - Intel Comet Lake PCH

Ubuntu 20.10 - 5.11.0-051100rc2daily20210106-generic - GNOME Shell 3.38.1

3 Systems - 326 Benchmark Results

AMD EPYC 7742 64-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 21.10 - 5.13.0-19-generic - GNOME Shell 40.5

3 Systems - 3 Benchmark Results

AMD Ryzen 5 4500U - LENOVO LNVNB161216 - AMD Renoir Root Complex

Ubuntu 21.04 - 5.13.0-051300-generic - GNOME Shell 3.38.4

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