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ECP-CANDLE 1.1.0
pts/ecp-candle-1.1.0
- 02 August 2021 -
Update against ECP-CANDLE Benchmarks v0.4 upstream.
downloads.xml
<?xml version="1.0"?> <!--Phoronix Test Suite v10.4.0--> <PhoronixTestSuite> <Downloads> <Package> <URL>https://github.com/ECP-CANDLE/Benchmarks/archive/refs/tags/v0.4.tar.gz</URL> <MD5>6b8de4fd61d2d2eff51d789a1bee543a</MD5> <SHA256>46a249757bf416aa22a6819fb5c23f3bab2953a753d1558828704db59d3853fe</SHA256> <FileName>ECP-CANDLE-Benchmarks-0.4.tar.gz</FileName> <FileSize>14549122</FileSize> </Package> <Package> <URL>https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/P1B2/P1B2.test.csv</URL> <MD5>91a2737ec53ba84c812048ddf92c188c</MD5> <SHA256>0abbc1130637d9706189ba54bc59120d9d275f6f8771f1bb36c254777e42a36c</SHA256> <FileName>P1B2.test.csv</FileName> <FileSize>56690533</FileSize> </Package> <Package> <URL>https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/P1B2/P1B2.train.csv</URL> <MD5>f81edf56d1efce246d4a48002ff30f3d</MD5> <SHA256>2bc072811fb022aa014d93f95c9e9aaa03568e97366a81eeb59a8c656ce2ec56</SHA256> <FileName>P1B2.train.csv</FileName> <FileSize>169631113</FileSize> </Package> <Package> <URL>ftp://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Pilot2/3k_run10_10us.35fs-DPPC.10-DOPC.70-CHOL.20.dir.tar.gz</URL> <MD5>ece75b704ec63ac9c39afd74b63497dc</MD5> <SHA256>1321b53b8944d95eeee91b52438c6f4423667dcb5b2715b517fc6a9ac2834362</SHA256> <FileName>3k_run10_10us.35fs-DPPC.10-DOPC.70-CHOL.20.dir.tar.gz</FileName> <FileSize>3088534718</FileSize> </Package> <Package> <URL>ftp://ftp.mcs.anl.gov/pub/candle/public/benchmarks/P3B1/P3B1_data.tar.gz</URL> <MD5>d0ba862c83f07d45a099292536b53cbb</MD5> <SHA256>c89c9d3aa0f74d19c099f94c16729693a207480de71e10c90a7341523127dbcd</SHA256> <FileName>P3B1_data.tar.gz</FileName> <FileSize>108587183</FileSize> </Package> <Package> <URL>http://ftp.mcs.anl.gov/pub/candle/public/benchmarks/P3B2/P3B2_data.tgz</URL> <MD5>1d4a3d6177529ac853194f9c0d3f655e</MD5> <SHA256>e0106cc9eca9d55f4e17a302f4e7d1f6b6845b5113d0ee38f6419d4f94ab64cd</SHA256> <FileName>P3B2_data.tgz</FileName> <FileSize>7786187</FileSize> </Package> </Downloads> </PhoronixTestSuite>
install.sh
#!/bin/sh tar -xf ECP-CANDLE-Benchmarks-0.4.tar.gz mkdir -p Benchmarks-0.4/Data/Pilot1 mkdir -p Benchmarks-0.4/Data/Pilot2 mkdir -p Benchmarks-0.4/Data/Pilot3 cp *.csv Benchmarks-0.4/Data/Pilot1 cp 3k_run10_10us.35fs-DPPC.10-DOPC.70-CHOL.20.dir.tar.gz Benchmarks-0.4/Data/Pilot2 cp P3B1_data.tar.gz Benchmarks-0.4/Data/Pilot3 cp P3B2_data.tgz Benchmarks-0.4/Data/Pilot3 cd ~/Benchmarks-0.4/Data/Pilot2 tar -xf 3k_run10_10us.35fs-DPPC.10-DOPC.70-CHOL.20.dir.tar.gz cd ~/Benchmarks-0.4/Data/Pilot3 tar -xf P3B1_data.tar.gz tar -xf P3B2_data.tgz pip3 install --user torch numpy tqdm keras tensorflow sklearn pandas matplotlib numba astropy patsy statsmodels echo $? > ~/install-exit-status cd ~ echo "#!/bin/sh cd Benchmarks-0.4 case \$@ in \"P1B2\") cd Pilot1/P1B2/ python3 ./p1b2_baseline_keras2.py echo \$? > ~/test-exit-status ;; \"P2B1\") cd Pilot2/P2B1/ python3 ./p2b1_baseline_keras2.py echo \$? > ~/test-exit-status ;; \"P3B1\") cd Pilot3/P3B1/ python3 ./p3b1_baseline_keras2.py echo \$? > ~/test-exit-status ;; \"P3B2\") cd Pilot3/P3B2/ python3 ./p3b2_baseline_keras2.py echo \$? > ~/test-exit-status ;; esac " > ecp-candle chmod +x ecp-candle
results-definition.xml
<?xml version="1.0"?> <!--Phoronix Test Suite v10.4.0--> <PhoronixTestSuite> <SystemMonitor> <Sensor>sys.time</Sensor> </SystemMonitor> </PhoronixTestSuite>
test-definition.xml
<?xml version="1.0"?> <!--Phoronix Test Suite v10.4.0--> <PhoronixTestSuite> <TestInformation> <Title>ECP-CANDLE</Title> <AppVersion>0.4</AppVersion> <Description>The CANDLE benchmark codes implement deep learning architectures relevant to problems in cancer. These architectures address problems at different biological scales, specifically problems at the molecular, cellular and population scales.</Description> <ResultScale>Seconds</ResultScale> <Proportion>LIB</Proportion> <SubTitle>Time To Completion</SubTitle> <TimesToRun>1</TimesToRun> </TestInformation> <TestProfile> <Version>1.1.0</Version> <SupportedPlatforms>Linux, BSD</SupportedPlatforms> <SoftwareType>Utility</SoftwareType> <TestType>System</TestType> <License>Free</License> <Status>Verified</Status> <ExternalDependencies>python</ExternalDependencies> <EnvironmentSize>14800</EnvironmentSize> <ProjectURL>https://ecp-candle.github.io/Candle/html/readme.html</ProjectURL> <RepositoryURL>https://github.com/ECP-CANDLE/Benchmarks</RepositoryURL> <InternalTags>Python</InternalTags> <Maintainer>Michael Larabel</Maintainer> </TestProfile> <TestSettings> <Option> <DisplayName>Benchmark</DisplayName> <Identifier>benchmark</Identifier> <Menu> <Entry> <Name>P1B2</Name> <Value>P1B2</Value> </Entry> <Entry> <Name>P3B1</Name> <Value>P3B1</Value> </Entry> <Entry> <Name>P3B2</Name> <Value>P3B2</Value> </Entry> </Menu> </Option> </TestSettings> </PhoronixTestSuite>