davei-daveiawsuseast2v3-00030-13-0001.c7a-4xlarge.hmmer

amazon testing on Rocky 8.9 via the Phoronix Test Suite.

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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD EPYC 9R14
October 31
  7 Minutes


davei-daveiawsuseast2v3-00030-13-0001.c7a-4xlarge.hmmerOpenBenchmarking.orgPhoronix Test SuiteAMD EPYC 9R14 (16 Cores)Amazon EC2 c7a.4xlarge (1.0 BIOS)Intel 440FX 82441FX PMC32GB107GB Amazon Elastic Block StoreAmazon ElasticRocky 8.94.18.0-513.18.1.el8_9.x86_64 (x86_64)X ServerGCC 13.2.1 20231205nfsamazonProcessorMotherboardChipsetMemoryDiskNetworkOSKernelDisplay ServerCompilerFile-SystemSystem LayerDavei-daveiawsuseast2v3-00030-13-0001.c7a-4xlarge.hmmer BenchmarksSystem Logs- nvme_core.io_timeout=4294967295 nvme_core.max_retries=10 - Transparent Huge Pages: never- SRUN_DEBUG=3 SLURMD_DEBUG=2- --build=x86_64-redhat-linux --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-libstdcxx-backtrace --enable-multilib --enable-offload-defaulted --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/opt/rh/gcc-toolset-13/root/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-libstdcxx-zoneinfo=/usr/share/zoneinfo --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - CPU Microcode: 0xa101148- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Vulnerable: Safe RET no microcode + spec_store_bypass: Vulnerable + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Vulnerable IBPB: disabled STIBP: disabled PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchAMD EPYC 9R14306090120150SE +/- 0.55, N = 3137.221. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi