wrf relion

AMD Ryzen 9 9950X 16-Core testing with a ASUS ROG STRIX X670E-E GAMING WIFI (2204 BIOS) and AMD Radeon RX 7900 GRE 16GB on Ubuntu 24.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2408272-NE-WRFRELION12
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a
August 26
  2 Hours, 5 Minutes
b
August 27
  56 Minutes
c
August 27
  2 Hours, 4 Minutes
d
August 27
  2 Hours, 8 Minutes
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wrf relionOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 9 9950X 16-Core @ 4.30GHz (16 Cores / 32 Threads)ASUS ROG STRIX X670E-E GAMING WIFI (2204 BIOS)AMD Device 14d82 x 32GB DDR5-6400MT/s Corsair CMK64GX5M2B6400C322000GB Corsair MP700 PROAMD Radeon RX 7900 GRE 16GBAMD Navi 31 HDMI/DPDELL U2723QEIntel I225-V + Intel Wi-Fi 6EUbuntu 24.046.10.0-phx (x86_64)GNOME Shell 46.0X Server + Wayland4.6 Mesa 24.2~git2406040600.8112d4~oibaf~n (git-8112d44 2024-06-04 noble-oibaf-ppa) (LLVM 17.0.6 DRM 3.57)GCC 13.2.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionWrf Relion BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-backtrace --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0xb40401a- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS; IBPB: conditional; STIBP: always-on; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

RELION

RELION - REgularised LIkelihood OptimisatioN - is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy (cryo-EM). It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterRELION 4.0.1Test: Basic - Device: CPUabcd2004006008001000SE +/- 9.37, N = 9SE +/- 9.70, N = 4SE +/- 13.95, N = 9SE +/- 8.70, N = 9825.91823.96821.79843.851. (CXX) g++ options: -fopenmp -std=c++11 -O3 -rdynamic -ldl -ltiff -lfftw3f -lfftw3 -lpng -ljpeg -lmpi_cxx -lmpi

WRF

WRF, the Weather Research and Forecasting Model, is a "next-generation mesoscale numerical weather prediction system designed for both atmospheric research and operational forecasting applications. It features two dynamical cores, a data assimilation system, and a software architecture supporting parallel computation and system extensibility." Learn more via the OpenBenchmarking.org test page.

Input: conus 2.5km

a: The test quit with a non-zero exit status. E: mpirun noticed that process rank 0 with PID 0 on node phoronix-System-Product-Name exited on signal 9 (Killed).

b: The test quit with a non-zero exit status. E: mpirun noticed that process rank 0 with PID 0 on node phoronix-System-Product-Name exited on signal 9 (Killed).

c: The test quit with a non-zero exit status. E: mpirun noticed that process rank 0 with PID 0 on node phoronix-System-Product-Name exited on signal 9 (Killed).

d: The test quit with a non-zero exit status. E: mpirun noticed that process rank 0 with PID 0 on node phoronix-System-Product-Name exited on signal 9 (Killed).