namd gromacs dav1d

AMD Ryzen 5 8500G testing with a ASRock B650 Pro RS (2.06.AS03 BIOS) and AMD Phoenix2 512MB on Ubuntu 23.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2402188-NE-NAMDGROMA84
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February 18
  7 Minutes
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a

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: amd-pstate-epp powersave (EPP: balance_performance) - CPU Microcode: 0xa708004
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

b

c

Processor: AMD Ryzen 5 8500G @ 5.08GHz (6 Cores / 12 Threads), Motherboard: ASRock B650 Pro RS (2.06.AS03 BIOS), Chipset: AMD Device 14e8, Memory: 2 x 16GB DRAM-6400MT/s F5-6400J3239G16G, Disk: Western Digital WD_BLACK SN850X 2000GB, Graphics: AMD Phoenix2 512MB, Audio: AMD Rembrandt Radeon HD Audio, Monitor: MX279, Network: Realtek RTL8125 2.5GbE

OS: Ubuntu 23.10, Kernel: 6.7.3-060703-generic (x86_64), Desktop: GNOME Shell 45.2, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 24.1~git2402040600.8368a9~oibaf~m (git-8368a97 2024-02-04 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.57), Compiler: GCC 13.2.0, File-System: ext4, Screen Resolution: 1920x1080

namd gromacs dav1dOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 5 8500G @ 5.08GHz (6 Cores / 12 Threads)ASRock B650 Pro RS (2.06.AS03 BIOS)AMD Device 14e82 x 16GB DRAM-6400MT/s F5-6400J3239G16GWestern Digital WD_BLACK SN850X 2000GBAMD Phoenix2 512MBAMD Rembrandt Radeon HD AudioMX279Realtek RTL8125 2.5GbEUbuntu 23.106.7.3-060703-generic (x86_64)GNOME Shell 45.2X Server + Wayland4.6 Mesa 24.1~git2402040600.8368a9~oibaf~m (git-8368a97 2024-02-04 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.57)GCC 13.2.0ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionNamd Gromacs Dav1d BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: amd-pstate-epp powersave (EPP: balance_performance) - CPU Microcode: 0xa708004- gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

abcResult OverviewPhoronix Test Suite100%100%100%101%101%dav1ddav1ddav1ddav1dGROMACSNAMDNAMDChimera 1080pS.N.1C.1.1.bSummer Nature 4KMPI CPU - water_GMX50_bareA.w.3.5.AS.w.1.0.6.A

namd gromacs dav1dgromacs: MPI CPU - water_GMX50_barenamd: STMV with 1,066,628 Atomsnamd: ATPase with 327,506 Atomsdav1d: Summer Nature 4Kdav1d: Chimera 1080p 10-bitdav1d: Chimera 1080pdav1d: Summer Nature 1080pabc1.1060.326471.07800228.12619684.448951.1080.326491.07736227.71619.79687.34897.241.1060.326691.07710227.61618.34681.74899.57OpenBenchmarking.org

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2024Implementation: MPI CPU - Input: water_GMX50_bareacb0.24930.49860.74790.99721.24651.1061.1061.1081. (CXX) g++ options: -O3 -lm

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterNAMD 3.0b6Input: STMV with 1,066,628 Atomsabc0.07350.1470.22050.2940.36750.326470.326490.32669

OpenBenchmarking.orgns/day, More Is BetterNAMD 3.0b6Input: ATPase with 327,506 Atomscba0.24260.48520.72780.97041.2131.077101.077361.07800

dav1d

Dav1d is an open-source, speedy AV1 video decoder supporting modern SIMD CPU features. This test profile times how long it takes to decode sample AV1 video content. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgFPS, More Is Betterdav1d 1.4Video Input: Summer Nature 4Kcba50100150200250227.61227.71228.121. (CC) gcc options: -pthread

OpenBenchmarking.orgFPS, More Is Betterdav1d 1.4Video Input: Chimera 1080p 10-bitcab130260390520650618.34619.00619.791. (CC) gcc options: -pthread

OpenBenchmarking.orgFPS, More Is Betterdav1d 1.4Video Input: Chimera 1080pcab150300450600750681.74684.44687.341. (CC) gcc options: -pthread

OpenBenchmarking.orgFPS, More Is Betterdav1d 1.4Video Input: Summer Nature 1080pabc2004006008001000895.00897.24899.571. (CC) gcc options: -pthread

a

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: amd-pstate-epp powersave (EPP: balance_performance) - CPU Microcode: 0xa708004
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 18 February 2024 21:02 by user phoronix.

b

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: amd-pstate-epp powersave (EPP: balance_performance) - CPU Microcode: 0xa708004
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 18 February 2024 21:23 by user phoronix.

c

Processor: AMD Ryzen 5 8500G @ 5.08GHz (6 Cores / 12 Threads), Motherboard: ASRock B650 Pro RS (2.06.AS03 BIOS), Chipset: AMD Device 14e8, Memory: 2 x 16GB DRAM-6400MT/s F5-6400J3239G16G, Disk: Western Digital WD_BLACK SN850X 2000GB, Graphics: AMD Phoenix2 512MB, Audio: AMD Rembrandt Radeon HD Audio, Monitor: MX279, Network: Realtek RTL8125 2.5GbE

OS: Ubuntu 23.10, Kernel: 6.7.3-060703-generic (x86_64), Desktop: GNOME Shell 45.2, Display Server: X Server + Wayland, OpenGL: 4.6 Mesa 24.1~git2402040600.8368a9~oibaf~m (git-8368a97 2024-02-04 mantic-oibaf-ppa) (LLVM 16.0.6 DRM 3.57), Compiler: GCC 13.2.0, File-System: ext4, Screen Resolution: 1920x1080

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-XYspKM/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: amd-pstate-epp powersave (EPP: balance_performance) - CPU Microcode: 0xa708004
Security Notes: gather_data_sampling: Not affected + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_rstack_overflow: Mitigation of Safe RET + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced / Automatic IBRS IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 18 February 2024 21:31 by user phoronix.