gromacs1

4 x Intel Xeon Gold 6130 testing with a Dell PowerEdge R940 [0D41HC] (2.15.1 BIOS) and Matrox G200eW3 on Debian GNU/Linux 11 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2308124-NE-GROMACS1593
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patched
August 12 2023
  3 Minutes
nopatch
August 12 2023
  3 Minutes
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gromacs1OpenBenchmarking.orgPhoronix Test Suite4 x Intel Xeon Gold 6130 @ 3.70GHz (64 Cores / 128 Threads)Dell PowerEdge R940 [0D41HC] (2.15.1 BIOS)Intel Sky Lake-E DMI3 Registers24 x 32 GB DDR4-2666MT/s 36ASF4G72PZ-2G6D11600GB Dell Flash PM1725b 1.6TB AIC + 1600GB Dell Flash NVMe PM1725 1.6TB AIC + 480GB INTEL SSDSC2KG480G7RMatrox G200eW34 x Intel X710 for 10GbE SFP+Debian GNU/Linux 116.1.38 (x86_64)1.0.2GCC 10.2.1 20210110ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelVulkanCompilerFile-SystemScreen ResolutionGromacs1 BenchmarksSystem Logs- Transparent Huge Pages: always- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-mutex --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-Km9U7s/gcc-10-10.2.1/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: intel_pstate performance (EPP: performance) - CPU Microcode: 0x2006e05- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Mitigation of Clear buffers; SMT vulnerable + retbleed: Mitigation of IBRS + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of IBRS IBPB: conditional STIBP: conditional RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Mitigation of Clear buffers; SMT vulnerable

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2023Implementation: MPI CPU - Input: water_GMX50_barenopatchpatched246810SE +/- 0.021, N = 3SE +/- 0.009, N = 35.8476.0251. (CXX) g++ options: -O3 -pthread