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AMD Ryzen Threadripper 3990X 64-Core testing with a Gigabyte TRX40 AORUS PRO WIFI (F6 BIOS) and AMD Radeon RX 5700 8GB on Ubuntu 23.04 via the Phoronix Test Suite.

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June 19 2023
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June 19 2023
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repOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads)Gigabyte TRX40 AORUS PRO WIFI (F6 BIOS)AMD Starship/Matisse128GBSamsung SSD 970 EVO Plus 500GBAMD Radeon RX 5700 8GB (1750/875MHz)AMD Navi 10 HDMI AudioDELL P2415QIntel I211 + Intel Wi-Fi 6 AX200Ubuntu 23.046.2.0-20-generic (x86_64)GNOME Shell 44.0X Server + Wayland4.6 Mesa 23.0.2 (LLVM 15.0.7 DRM 3.49)GCC 12.2.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLCompilerFile-SystemScreen ResolutionRep BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-defaulted --enable-offload-targets=nvptx-none=/build/gcc-12-Pa930Z/gcc-12-12.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-12-Pa930Z/gcc-12-12.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301055- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT enabled with STIBP protection + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

repospray: particle_volume/ao/real_timeospray: particle_volume/scivis/real_timeospray: particle_volume/pathtracer/real_timeospray: gravity_spheres_volume/dim_512/ao/real_timeospray: gravity_spheres_volume/dim_512/scivis/real_timeospray: gravity_spheres_volume/dim_512/pathtracer/real_timerelion: Basic - CPUab13.007013.1230149.0766.893176.3986510.56941001.32613.031813.0230150.9167.076796.4890110.70881035.340OpenBenchmarking.org

OSPRay

Intel OSPRay is a portable ray-tracing engine for high-performance, high-fidelity scientific visualizations. OSPRay builds off Intel's Embree and Intel SPMD Program Compiler (ISPC) components as part of the oneAPI rendering toolkit. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: particle_volume/ao/real_timeab3691215SE +/- 0.03, N = 3SE +/- 0.01, N = 313.0113.03

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: particle_volume/scivis/real_timeba3691215SE +/- 0.01, N = 3SE +/- 0.08, N = 313.0213.12

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: particle_volume/pathtracer/real_timeab306090120150SE +/- 0.99, N = 3SE +/- 0.23, N = 3149.08150.92

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: gravity_spheres_volume/dim_512/ao/real_timeab246810SE +/- 0.01960, N = 36.893177.07679

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: gravity_spheres_volume/dim_512/scivis/real_timeab246810SE +/- 0.01172, N = 36.398656.48901

OpenBenchmarking.orgItems Per Second, More Is BetterOSPRay 2.12Benchmark: gravity_spheres_volume/dim_512/pathtracer/real_timeab3691215SE +/- 0.04, N = 310.5710.71

RELION

RELION - REgularised LIkelihood OptimisatioN - is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy (cryo-EM). It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterRELION 4.0.1Test: Basic - Device: CPUba2004006008001000SE +/- 28.53, N = 6SE +/- 32.97, N = 61035.341001.331. (CXX) g++ options: -fopenmp -std=c++11 -O3 -rdynamic -ldl -ltiff -lfftw3f -lfftw3 -lpng -ljpeg -lmpi_cxx -lmpi