namd-cuda-run1

2 x AMD EPYC 7713 64-Core testing with a TYAN S8251GM2NE-2T (V2.03.B10 BIOS) and llvmpipe on Ubuntu 22.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2303142-NE-NAMDCUDAR37
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
llvmpipe
March 14 2023
  8 Minutes


namd-cuda-run1OpenBenchmarking.orgPhoronix Test Suite2 x AMD EPYC 7713 64-Core @ 2.00GHz (128 Cores / 256 Threads)TYAN S8251GM2NE-2T (V2.03.B10 BIOS)AMD Starship/Matisse1008GB960GB SAMSUNG MZQL2960HCJR-00A07llvmpipeNVIDIA GA102 HD AudioPL2483H2 x Intel 10G X550TUbuntu 22.045.19.0-35-generic (x86_64)GNOME Shell 42.5X Server 1.21.1.3NVIDIA 530.30.024.5 Mesa 22.2.5 (LLVM 15.0.6 256 bits)OpenCL 3.0 CUDA 12.1.681.3.236GCC 11.3.0 + CUDA 12.1ext41920x1080ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLOpenCLVulkanCompilerFile-SystemScreen ResolutionNamd-cuda-run1 BenchmarksSystem Logs- Transparent Huge Pages: madvise- Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0xa0011a9 - BAR1 / Visible vRAM Size: 256 MiB - vBIOS Version: 94.02.5c.00.02- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional IBRS_FW STIBP: always-on RSB filling PBRSB-eIBRS: Not affected + srbds: Not affected + tsx_async_abort: Not affected

NAMD CUDA

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. This version of the NAMD test profile uses CUDA GPU acceleration. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD CUDA 2.14ATPase Simulation - 327,506 Atomsllvmpipe0.01670.03340.05010.06680.0835SE +/- 0.00608, N = 150.07414