timed hmmer

AMD Ryzen 7 3800X 8-Core testing with a ASUS CROSSHAIR VI HERO (7901 BIOS) and eVGA NVIDIA GeForce GTX 1080 Ti 11GB on ManjaroLinux 21.1.6 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2111033-TJ-TIMEDHMME37
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Result
Identifier
View Logs
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD Ryzen 7 3800X 8-Core
November 03 2021
  6 Minutes


timed hmmerOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen 7 3800X 8-Core @ 4.56GHz (8 Cores / 16 Threads)ASUS CROSSHAIR VI HERO (7901 BIOS)AMD Starship/Matisse32GB2048GB PLEXTOR PX-2TM10PG + 1000GB Samsung SSD 860 + 4001GB Seagate ST4000LM016-1N21 + 2 x 240GB SanDisk SDSSDXPSeVGA NVIDIA GeForce GTX 1080 Ti 11GBNVIDIA GP102 HDMI Audio27GL850Intel I211ManjaroLinux 21.1.65.14.10-1-MANJARO (x86_64)KDE Plasma 5.22.5X Server 1.20.13NVIDIA 470.63.014.6.0GCC 11.1.0btrfs2560x1440ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionTimed Hmmer BenchmarksSystem Logs- Transparent Huge Pages: madvise- --disable-libssp --disable-libstdcxx-pch --disable-libunwind-exceptions --disable-werror --enable-__cxa_atexit --enable-cet=auto --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-default-ssp --enable-gnu-indirect-function --enable-gnu-unique-object --enable-install-libiberty --enable-languages=c,c++,ada,fortran,go,lto,objc,obj-c++,d --enable-lto --enable-multilib --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-isl --with-linker-hash-style=gnu - Scaling Governor: acpi-cpufreq performance (Boost: Enabled) - CPU Microcode: 0x8701021- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.2Pfam Database SearchAMD Ryzen 7 3800X 8-Core20406080100SE +/- 0.27, N = 3101.581. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm -lmpi