hmmer1

2 x Intel Xeon Gold 6330 testing with a Supermicro X12DDW-A6 v1.00 (1.0b BIOS) and ASPEED on CentOS Linux 8 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2104239-HA-HMMER131763
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hmmer1OpenBenchmarking.orgPhoronix Test Suite 10.4.0m12 x Intel Xeon Gold 6330 (56 Cores / 112 Threads)Supermicro X12DDW-A6 v1.00 (1.0b BIOS)Intel Device 099816 x 32 GB DDR4-2933MT/s 36ASF4G72PZ-2G9E22 x 1920GB INTEL SSDSC2KB01 + 960GB Micron_5200_MTFDASPEED4 x Intel I350CentOS Linux 84.18.0-80.el8.x86_64 (x86_64)GCC 8.3.1 20191121xfs1024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemScreen ResolutionHmmer1 BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-libmpx --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-cet --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,fortran,lto --enable-multilib --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-gcc-major-version-only --with-isl --with-linker-hash-style=gnu --with-tune=generic --without-cuda-driver - CPU Microcode: 0xd000250- SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search2 x Intel Xeon Gold 633060120180240300SE +/- 0.85, N = 3278.841. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm