Hmmer

Hmmer

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2104146-HA-HMMER724354
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
AMD EPYC 7763 64-Core
April 14 2021
  7 Minutes


HmmerOpenBenchmarking.orgPhoronix Test SuiteAMD EPYC 7763 64-Core @ 2.45GHz (64 Cores)Supermicro H12SSW-NT v1.01 (2.0 BIOS)AMD Device 14802 x 16384 MB DDR4-2400MT/s HMA82GR7DJR4N-XN8002GB HGST HUS728T8TAL + 18000GB Western Digital WUH721818ALllvmpipe2 x Broadcom BCM57416 NetXtreme-E Dual-Media 10G RDMACentOS Linux 73.10.0-957.el7.x86_64 (x86_64)GNOME Shell 3.28.3X Server 1.20.1modesetting 1.20.12.1 Mesa 18.0.5 (LLVM 6.0 128 bits)GCC 4.8.5 20150623xfs1440x900ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionHmmer BenchmarksSystem Logs- --build=x86_64-redhat-linux --disable-libgcj --disable-libunwind-exceptions --enable-__cxa_atexit --enable-bootstrap --enable-checking=release --enable-gnu-indirect-function --enable-gnu-unique-object --enable-initfini-array --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-shared --enable-threads=posix --mandir=/usr/share/man --with-arch_32=x86-64 --with-linker-hash-style=gnu --with-tune=generic - Scaling Governor: acpi-cpufreq conservative (Boost: Enabled) - CPU Microcode: 0xa001114 - SELinux + l1tf: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of Load fences __user pointer sanitization + spectre_v2: Mitigation of Full retpoline

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database SearchAMD EPYC 7763 64-Core306090120150SE +/- 0.11, N = 3139.131. (CC) gcc options: -std=gnu99 -O3 -pthread -lhmmer -leasel -lm