namd_results_12_20_2020

AMD Ryzen Threadripper 3960X 24-Core testing with a ASUS ROG STRIX TRX40-E GAMING (1303 BIOS) and NVIDIA GeForce RTX 3080 10GB on Fedora 33 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2012218-AS-NAMDRESUL77
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Base config
December 20 2020
  3 Minutes


namd_results_12_20_2020OpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3960X 24-Core @ 3.80GHz (24 Cores / 48 Threads)ASUS ROG STRIX TRX40-E GAMING (1303 BIOS)AMD Starship/Matisse129024MB1000GB Seagate FireCuda 520 SSD ZP1000GM30002 + 2 x 8002GB Western Digital WD80EFAX-68K + 1000GB External USB 3.0NVIDIA GeForce RTX 3080 10GB (1710/9501MHz)NVIDIA Device 1aef2 x LG HDR 4KRealtek RTL8125 2.5GbE + Intel I211 + Intel Wi-Fi 6 AX200Fedora 335.9.14-200.fc33.x86_64 (x86_64)GNOME Shell 3.38.2X Server 1.20.10NVIDIA 455.45.014.6.0GCC 10.2.1 20201125btrfs7680x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNamd_results_12_20_2020 BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq schedutil- SELinux + itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 AtomsBase config0.17480.34960.52440.69920.874SE +/- 0.00920, N = 30.77691