epyc 7502 dec

AMD EPYC 7502 32-Core testing with a ASRockRack EPYCD8 (P2.10 BIOS) and llvmpipe on Ubuntu 20.10 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2012043-HA-EPYC7502D91
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Bioinformatics 2 Tests
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HPC - High Performance Computing 4 Tests
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December 04 2020
  1 Hour, 5 Minutes
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December 04 2020
  1 Hour, 5 Minutes
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December 04 2020
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1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830101c
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

2

3

Processor: AMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads), Motherboard: ASRockRack EPYCD8 (P2.10 BIOS), Chipset: AMD Starship/Matisse, Memory: 126GB, Disk: 280GB INTEL SSDPED1D280GA, Graphics: llvmpipe, Audio: AMD Starship/Matisse, Monitor: VE228, Network: 2 x Intel I350

OS: Ubuntu 20.10, Kernel: 5.8.0-29-generic (x86_64), Desktop: GNOME Shell 3.38.1, Display Server: X Server 1.20.9, Display Driver: modesetting 1.20.9, OpenGL: 4.5 Mesa 20.2.1 (LLVM 11.0.0 256 bits), Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 1920x1080

epyc 7502 decProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution123AMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads)ASRockRack EPYCD8 (P2.10 BIOS)AMD Starship/Matisse126GB280GB INTEL SSDPED1D280GAllvmpipeAMD Starship/MatisseVE2282 x Intel I350Ubuntu 20.105.8.0-29-generic (x86_64)GNOME Shell 3.38.1X Server 1.20.9modesetting 1.20.94.5 Mesa 20.2.1 (LLVM 11.0.0 256 bits)GCC 10.2.0ext41920x1080OpenBenchmarking.orgCompiler Details- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v Processor Details- Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830101c Security Details- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

123Result OverviewPhoronix Test Suite100%101%102%104%105%LAMMPS Molecular Dynamics SimulatorHimeno BenchmarkTimed Clash CompilationTimed HMMer SearchLAMMPS Molecular Dynamics SimulatorNAMDRhodopsin ProteinP.P.STime To CompileP.D.S20k AtomsATPase Simulation - 327,506 Atoms

epyc 7502 decnamd: ATPase Simulation - 327,506 Atomshmmer: Pfam Database Searchlammps: 20k Atomslammps: Rhodopsin Proteinhimeno: Poisson Pressure Solverbuild-clash: Time To Compile1230.77537177.22417.41915.8433899.006414501.0840.77493176.63417.38615.2433862.531438503.7550.77517177.10517.39515.1283919.876977501.668OpenBenchmarking.org

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms1230.17450.3490.52350.6980.8725SE +/- 0.00038, N = 3SE +/- 0.00067, N = 3SE +/- 0.00034, N = 30.775370.774930.77517
OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms123246810Min: 0.77 / Avg: 0.78 / Max: 0.78Min: 0.77 / Avg: 0.77 / Max: 0.78Min: 0.77 / Avg: 0.78 / Max: 0.78

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search1234080120160200SE +/- 0.23, N = 3SE +/- 0.12, N = 3SE +/- 0.12, N = 3177.22176.63177.111. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 3.3.1Pfam Database Search123306090120150Min: 176.84 / Avg: 177.22 / Max: 177.64Min: 176.41 / Avg: 176.63 / Max: 176.82Min: 176.93 / Avg: 177.11 / Max: 177.351. (CC) gcc options: -O3 -pthread -lhmmer -leasel -lm

LAMMPS Molecular Dynamics Simulator

LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: 20k Atoms12348121620SE +/- 0.07, N = 3SE +/- 0.07, N = 3SE +/- 0.04, N = 317.4217.3917.401. (CXX) g++ options: -O3 -pthread -lm
OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: 20k Atoms12348121620Min: 17.34 / Avg: 17.42 / Max: 17.55Min: 17.3 / Avg: 17.39 / Max: 17.52Min: 17.32 / Avg: 17.39 / Max: 17.461. (CXX) g++ options: -O3 -pthread -lm

OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: Rhodopsin Protein12348121620SE +/- 0.27, N = 15SE +/- 0.36, N = 12SE +/- 0.34, N = 1515.8415.2415.131. (CXX) g++ options: -O3 -pthread -lm
OpenBenchmarking.orgns/day, More Is BetterLAMMPS Molecular Dynamics Simulator 29Oct2020Model: Rhodopsin Protein12348121620Min: 13.92 / Avg: 15.84 / Max: 17.58Min: 13.42 / Avg: 15.24 / Max: 16.93Min: 13.33 / Avg: 15.13 / Max: 17.451. (CXX) g++ options: -O3 -pthread -lm

Himeno Benchmark

The Himeno benchmark is a linear solver of pressure Poisson using a point-Jacobi method. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver1238001600240032004000SE +/- 55.22, N = 3SE +/- 50.21, N = 3SE +/- 54.61, N = 33899.013862.533919.881. (CC) gcc options: -O3 -mavx2
OpenBenchmarking.orgMFLOPS, More Is BetterHimeno Benchmark 3.0Poisson Pressure Solver1237001400210028003500Min: 3829.35 / Avg: 3899.01 / Max: 4008.06Min: 3762.11 / Avg: 3862.53 / Max: 3913.31Min: 3814.21 / Avg: 3919.88 / Max: 3996.661. (CC) gcc options: -O3 -mavx2

Timed Clash Compilation

Build the clash-lang Haskell to VHDL/Verilog/SystemVerilog compiler with GHC 8.10.1 Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed Clash CompilationTime To Compile123110220330440550SE +/- 0.02, N = 3SE +/- 0.78, N = 3SE +/- 1.78, N = 3501.08503.76501.67
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed Clash CompilationTime To Compile12390180270360450Min: 501.06 / Avg: 501.08 / Max: 501.11Min: 502.21 / Avg: 503.76 / Max: 504.69Min: 499.15 / Avg: 501.67 / Max: 505.11

1

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830101c
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 4 December 2020 12:43 by user phoronix.

2

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830101c
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 4 December 2020 13:57 by user phoronix.

3

Processor: AMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads), Motherboard: ASRockRack EPYCD8 (P2.10 BIOS), Chipset: AMD Starship/Matisse, Memory: 126GB, Disk: 280GB INTEL SSDPED1D280GA, Graphics: llvmpipe, Audio: AMD Starship/Matisse, Monitor: VE228, Network: 2 x Intel I350

OS: Ubuntu 20.10, Kernel: 5.8.0-29-generic (x86_64), Desktop: GNOME Shell 3.38.1, Display Server: X Server 1.20.9, Display Driver: modesetting 1.20.9, OpenGL: 4.5 Mesa 20.2.1 (LLVM 11.0.0 256 bits), Compiler: GCC 10.2.0, File-System: ext4, Screen Resolution: 1920x1080

Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-10-JvwpWM/gcc-10-10.2.0/debian/tmp-gcn/usr,hsa --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830101c
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: always-on RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 4 December 2020 15:26 by user phoronix.