namd_test

AMD Ryzen Threadripper 2920X 12-Core testing with a ASRock X399 Phantom Gaming 6 (P1.10 BIOS) and NVIDIA GeForce GTX 1080 8GB on openSUSE 20200919 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2009221-NI-NAMDTEST373
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Result
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Performance Per
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Date
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  Test
  Duration
namd_test
September 23 2020
  4 Minutes


namd_testOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 2920X 12-Core @ 3.50GHz (12 Cores / 24 Threads)ASRock X399 Phantom Gaming 6 (P1.10 BIOS)AMD 17h64GB512GB PCIe SSD + 1024GB PCIe SSD + 240GB SATA SSD + 2000GB Western Digital WD20EZRZ-00Z + 2000GB Seagate ST2000DM008-2FR1 + 480GB SATA SSDNVIDIA GeForce GTX 1080 8GB (2095/875MHz)Realtek ALC12202 x HP V270Intel I211 + Realtek RTL8125 2.5GbEopenSUSE 202009195.8.7-1-default (x86_64)GNOME Shell 3.36.6X Server 1.20.9 + Waylandmodesetting 1.20.94.6 Mesa 20.1.7 (LLVM 10.0.1)1.2.131GCC 10.2.1 20200825 [revision c0746a1beb1ba073c7981eb09f55b3d993b32e5c] + Clang 10.0.1btrfs3840x1184ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLVulkanCompilerFile-SystemScreen ResolutionNamd_test BenchmarksSystem Logs- Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x800820d- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsnamd_test0.42860.85721.28581.71442.143SE +/- 0.02318, N = 31.90469
OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atomsnamd_test246810Min: 1.88 / Avg: 1.9 / Max: 1.95