Gold6254-namd&stress&gromacs

Gold6254-namd&stress&gromacs

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Gold6254-namdstressgromacs
April 29 2020
  45 Minutes
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Gold6254-namdstressgromacs

Processor: Intel Xeon Gold 6254 @ 3.10GHz (18 Cores / 36 Threads), Motherboard: Supermicro X11DPG-QT (3.0c BIOS), Chipset: Intel Device 2020, Memory: 2 x 16384 MB DDR4-2400MHz, Disk: 1200GB INTEL SSDSC2BB01, Graphics: ASPEED, Audio: Realtek ALC888-VD, Network: 2 x Intel 10G X550T

OS: Ubuntu 16.04, Kernel: 4.15.0-29-generic (x86_64), Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, Compiler: GCC 5.4.0 20160609, File-System: ext4, Screen Resolution: 1024x768

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x5000021
Security Notes: meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB IBRS_FW

Gold6254-namd&stress&gromacsOpenBenchmarking.orgPhoronix Test SuiteIntel Xeon Gold 6254 @ 3.10GHz (18 Cores / 36 Threads)Supermicro X11DPG-QT (3.0c BIOS)Intel Device 20202 x 16384 MB DDR4-2400MHz1200GB INTEL SSDSC2BB01ASPEEDRealtek ALC888-VD2 x Intel 10G X550TUbuntu 16.044.15.0-29-generic (x86_64)X Server 1.19.6modesetting 1.19.6GCC 5.4.0 20160609ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionGold6254-namd&stress&gromacs PerformanceSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x5000021- meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB IBRS_FW

Gold6254-namd&stress&gromacsnamd: ATPase Simulation - 327,506 Atomsgromacs: Water Benchmarkstress-ng: MMAPstress-ng: NUMAstress-ng: MEMFDstress-ng: Atomicstress-ng: Cryptostress-ng: Mallocstress-ng: RdRandstress-ng: Forkingstress-ng: SENDFILEstress-ng: CPU Cachestress-ng: CPU Stressstress-ng: Semaphoresstress-ng: Matrix Mathstress-ng: Vector Mathstress-ng: Memory Copyingstress-ng: Socket Activitystress-ng: Context Switchingstress-ng: Glibc C String Functionsstress-ng: Glibc Qsort Data Sortingstress-ng: System V Message PassingGold6254-namdstressgromacs1.040731.095651.62437.761278.68163094.333911.14113997303.97252897.8390446.02222953.2087.637399.892840638.9699247.9860683.361474.4513617.945273426.411571255.10325.248596873.10OpenBenchmarking.org

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 AtomsGold6254-namdstressgromacs0.23420.46840.70260.93681.171SE +/- 0.00546, N = 31.04073

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water BenchmarkGold6254-namdstressgromacs0.24640.49280.73920.98561.232SE +/- 0.000, N = 31.0951. (CXX) g++ options: -O3 -lrt -lpthread -lm

Stress-NG

Stress-NG is a Linux stress tool developed by Colin King of Canonical. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: MMAPGold6254-namdstressgromacs140280420560700SE +/- 1.73, N = 3651.621. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: NUMAGold6254-namdstressgromacs90180270360450SE +/- 3.11, N = 3437.761. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: MEMFDGold6254-namdstressgromacs30060090012001500SE +/- 2.48, N = 31278.681. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: AtomicGold6254-namdstressgromacs30K60K90K120K150KSE +/- 2106.38, N = 3163094.331. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: CryptoGold6254-namdstressgromacs8001600240032004000SE +/- 3.98, N = 33911.141. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: MallocGold6254-namdstressgromacs20M40M60M80M100MSE +/- 96088.18, N = 3113997303.971. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: RdRandGold6254-namdstressgromacs50K100K150K200K250KSE +/- 1.35, N = 3252897.831. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: ForkingGold6254-namdstressgromacs20K40K60K80K100KSE +/- 765.78, N = 390446.021. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: SENDFILEGold6254-namdstressgromacs50K100K150K200K250KSE +/- 1061.19, N = 3222953.201. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: CPU CacheGold6254-namdstressgromacs20406080100SE +/- 0.88, N = 887.631. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: CPU StressGold6254-namdstressgromacs16003200480064008000SE +/- 6.80, N = 37399.891. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: SemaphoresGold6254-namdstressgromacs600K1200K1800K2400K3000KSE +/- 60.76, N = 32840638.961. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Matrix MathGold6254-namdstressgromacs20K40K60K80K100KSE +/- 370.82, N = 399247.981. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Vector MathGold6254-namdstressgromacs13K26K39K52K65KSE +/- 5.05, N = 360683.361. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Memory CopyingGold6254-namdstressgromacs30060090012001500SE +/- 0.52, N = 31474.451. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Socket ActivityGold6254-namdstressgromacs3K6K9K12K15KSE +/- 24.85, N = 313617.941. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Context SwitchingGold6254-namdstressgromacs1.1M2.2M3.3M4.4M5.5MSE +/- 67310.80, N = 45273426.411. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Glibc C String FunctionsGold6254-namdstressgromacs300K600K900K1200K1500KSE +/- 616.08, N = 31571255.101. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Glibc Qsort Data SortingGold6254-namdstressgromacs70140210280350SE +/- 1.73, N = 3325.241. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: System V Message PassingGold6254-namdstressgromacs2M4M6M8M10MSE +/- 31871.87, N = 38596873.101. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -ldl -lpthread -lc

Gold6254-namdstressgromacs

Processor: Intel Xeon Gold 6254 @ 3.10GHz (18 Cores / 36 Threads), Motherboard: Supermicro X11DPG-QT (3.0c BIOS), Chipset: Intel Device 2020, Memory: 2 x 16384 MB DDR4-2400MHz, Disk: 1200GB INTEL SSDSC2BB01, Graphics: ASPEED, Audio: Realtek ALC888-VD, Network: 2 x Intel 10G X550T

OS: Ubuntu 16.04, Kernel: 4.15.0-29-generic (x86_64), Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, Compiler: GCC 5.4.0 20160609, File-System: ext4, Screen Resolution: 1024x768

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x5000021
Security Notes: meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of __user pointer sanitization + spectre_v2: Mitigation of Full generic retpoline IBPB IBRS_FW

Testing initiated at 29 April 2020 04:44 by user root.