epyc7502-namd&stress&gromacs

epyc7502-namd&stress&gromacs

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epyc7502-namdstressgromacs
April 28 2020
  1 Hour, 5 Minutes
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epyc7502-namdstressgromacs

Processor: AMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads), Motherboard: GIGABYTE MZ01-CE1-00 v01000100 (R15 BIOS), Chipset: AMD Device 1480, Memory: 2 x 16384 MB DDR4-2400MHz Samsung M393A2K40CB1-CRC, Disk: 1200GB INTEL SSDSC2BB01, Graphics: NVIDIA GV102 11GB, Audio: NVIDIA Device 10f7, Network: 2 x Intel I210

OS: Ubuntu 16.04, Kernel: 4.15.0-96-generic (x86_64), Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, Compiler: GCC 5.4.0 20160609 + CUDA 10.0, File-System: ext4, Screen Resolution: 1024x768

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

epyc7502-namd&stress&gromacsOpenBenchmarking.orgPhoronix Test SuiteAMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads)GIGABYTE MZ01-CE1-00 v01000100 (R15 BIOS)AMD Device 14802 x 16384 MB DDR4-2400MHz Samsung M393A2K40CB1-CRC1200GB INTEL SSDSC2BB01NVIDIA GV102 11GBNVIDIA Device 10f72 x Intel I210Ubuntu 16.044.15.0-96-generic (x86_64)X Server 1.19.6modesetting 1.19.6GCC 5.4.0 20160609 + CUDA 10.0ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutionEpyc7502-namd&stress&gromacs PerformanceSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

epyc7502-namd&stress&gromacsnamd: ATPase Simulation - 327,506 Atomsgromacs: Water Benchmarkstress-ng: MMAPstress-ng: NUMAstress-ng: MEMFDstress-ng: Atomicstress-ng: Cryptostress-ng: Mallocstress-ng: Forkingstress-ng: SENDFILEstress-ng: CPU Cachestress-ng: CPU Stressstress-ng: Semaphoresstress-ng: Matrix Mathstress-ng: Vector Mathstress-ng: Memory Copyingstress-ng: Socket Activitystress-ng: Context Switchingstress-ng: Glibc C String Functionsstress-ng: Glibc Qsort Data Sortingstress-ng: System V Message Passingepyc7502-namdstressgromacs1.371370.933625.51607.54979.75404281.017325.09104065442.8428294.32506034.1139.8910757.125111675.57130083.44190292.431014.634162.5216528782.792586026.39403.2214426275.24OpenBenchmarking.org

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13ATPase Simulation - 327,506 Atomsepyc7502-namdstressgromacs0.30860.61720.92581.23441.543SE +/- 0.00136, N = 31.37137

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing on the CPU with the water_GMX50 data. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2020.1Water Benchmarkepyc7502-namdstressgromacs0.20990.41980.62970.83961.0495SE +/- 0.001, N = 30.9331. (CXX) g++ options: -O3 -lrt -lpthread -lm

Stress-NG

Stress-NG is a Linux stress tool developed by Colin King of Canonical. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: MMAPepyc7502-namdstressgromacs140280420560700SE +/- 0.73, N = 3625.511. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: NUMAepyc7502-namdstressgromacs130260390520650SE +/- 3.04, N = 3607.541. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: MEMFDepyc7502-namdstressgromacs2004006008001000SE +/- 0.42, N = 3979.751. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Atomicepyc7502-namdstressgromacs90K180K270K360K450KSE +/- 1788.67, N = 3404281.011. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Cryptoepyc7502-namdstressgromacs16003200480064008000SE +/- 1.47, N = 37325.091. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Mallocepyc7502-namdstressgromacs20M40M60M80M100MSE +/- 1534662.43, N = 15104065442.841. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Forkingepyc7502-namdstressgromacs6K12K18K24K30KSE +/- 204.68, N = 328294.321. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: SENDFILEepyc7502-namdstressgromacs110K220K330K440K550KSE +/- 493.29, N = 3506034.111. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: CPU Cacheepyc7502-namdstressgromacs918273645SE +/- 1.06, N = 1539.891. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: CPU Stressepyc7502-namdstressgromacs2K4K6K8K10KSE +/- 46.69, N = 310757.121. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Semaphoresepyc7502-namdstressgromacs1.1M2.2M3.3M4.4M5.5MSE +/- 6855.66, N = 35111675.571. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Matrix Mathepyc7502-namdstressgromacs30K60K90K120K150KSE +/- 566.21, N = 3130083.441. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Vector Mathepyc7502-namdstressgromacs40K80K120K160K200KSE +/- 8.15, N = 3190292.431. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Memory Copyingepyc7502-namdstressgromacs2004006008001000SE +/- 5.58, N = 31014.631. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Socket Activityepyc7502-namdstressgromacs9001800270036004500SE +/- 659.57, N = 154162.521. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Context Switchingepyc7502-namdstressgromacs4M8M12M16M20MSE +/- 326067.96, N = 1216528782.791. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Glibc C String Functionsepyc7502-namdstressgromacs600K1200K1800K2400K3000KSE +/- 1909.16, N = 32586026.391. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: Glibc Qsort Data Sortingepyc7502-namdstressgromacs90180270360450SE +/- 0.19, N = 3403.221. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

OpenBenchmarking.orgBogo Ops/s, More Is BetterStress-NG 0.11.07Test: System V Message Passingepyc7502-namdstressgromacs3M6M9M12M15MSE +/- 120679.77, N = 314426275.241. (CC) gcc options: -O2 -std=gnu99 -lm -lcrypt -lrt -lz -ldl -lpthread -lc

epyc7502-namdstressgromacs

Processor: AMD EPYC 7502 32-Core @ 2.50GHz (32 Cores / 64 Threads), Motherboard: GIGABYTE MZ01-CE1-00 v01000100 (R15 BIOS), Chipset: AMD Device 1480, Memory: 2 x 16384 MB DDR4-2400MHz Samsung M393A2K40CB1-CRC, Disk: 1200GB INTEL SSDSC2BB01, Graphics: NVIDIA GV102 11GB, Audio: NVIDIA Device 10f7, Network: 2 x Intel I210

OS: Ubuntu 16.04, Kernel: 4.15.0-96-generic (x86_64), Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, Compiler: GCC 5.4.0 20160609 + CUDA 10.0, File-System: ext4, Screen Resolution: 1024x768

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand - CPU Microcode: 0x8301025
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + tsx_async_abort: Not affected

Testing initiated at 28 April 2020 20:44 by user root.