p32-u16-computation

p32-u18-computation

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Bioinformatics 2 Tests
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p32-u16-computation
April 09 2019
  55 Minutes
p32-u18-computation
April 09 2019
  39 Minutes
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p32-u16-computationProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelCompilerFile-SystemSystem Layerp32-u16-computationp32-u18-computation8 x Intel Xeon E5-2630 v3 (8 Cores)OpenStack Foundation Nova v14.0.8 (Ubuntu-1.8.2-1ubuntu1~cloud0 BIOS)Intel 440FX 82441FX PMC1 x 8192 MB RAM QEMU78GBCirrus Logic GD 5446Red Hat Virtio deviceUbuntu 16.044.10.0-42-generic (x86_64)GCC 5.4.0 20160609ext4KVMUbuntu 18.044.15.0-46-generic (x86_64)GCC 7.3.0OpenBenchmarking.orgCompiler Details- p32-u16-computation: --build=x86_64-linux-gnu --disable-browser-plugin --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-default-libstdcxx-abi=new --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - p32-u18-computation: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --enable-libmpx --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib --with-tune=generic --without-cuda-driver -v Security Details- p32-u18-computation: KPTI + __user pointer sanitization + Full generic retpoline + PTE Inversion

p32-u16-computation vs. p32-u18-computation ComparisonPhoronix Test Suite 10.6.1Baseline+2.6%+2.6%+5.2%+5.2%+7.8%+7.8%4.1%4%2.9%C.C.4.S10.2%M.S.A10%Elapsed Time4.4%Dhrystone 2Composite4.1%P.D.STotal TimeSolitaire2.6%FhourstonesTimed MAFFT AlignmentCraftyBYTE Unix BenchmarkSciMarkTimed HMMer SearchSudokutMinionp32-u16-computationp32-u18-computation

p32-u16-computationhmmer: Pfam Database Searchmafft: Multiple Sequence Alignmentgmpbench: Total Timefhourstones: Complex Connect-4 Solvingbyte: Dhrystone 2scimark2: Compositecrafty: Elapsed Timetscp: AI Chess Performancedcraw: RAW To PPM Image Conversionminion: Solitairesudokut: Total Timep32-u16-computationp32-u18-computation10.444.512661895122523926409497081586846372.3711617.9710.044.962638812023445934393476098086519673.3811917.47OpenBenchmarking.org

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchp32-u16-computationp32-u18-computation3691215SE +/- 0.05, N = 3SE +/- 0.05, N = 310.4410.041. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Searchp32-u16-computationp32-u18-computation3691215Min: 10.37 / Avg: 10.44 / Max: 10.55Min: 9.94 / Avg: 10.04 / Max: 10.111. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentp32-u16-computationp32-u18-computation1.1162.2323.3484.4645.58SE +/- 0.02, N = 3SE +/- 0.09, N = 34.514.961. (CC) gcc options: -std=c99 -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.392Multiple Sequence Alignmentp32-u16-computationp32-u18-computation246810Min: 4.48 / Avg: 4.51 / Max: 4.53Min: 4.79 / Avg: 4.96 / Max: 5.111. (CC) gcc options: -std=c99 -O3 -lm -lpthread

GNU GMP GMPbench

GMPbench is a test of the GMP 6.1.2 math library. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgGMPbench Score, More Is BetterGNU GMP GMPbench 6.1.2Total Timep32-u16-computationp32-u18-computation6001200180024003000266126381. (CC) gcc options: -O3 -fomit-frame-pointer -lm

Fhourstones

This integer benchmark solves positions in the game of Connect-4, as played on a vertical 7x6 board. By default, it uses a 64Mb transposition table with the twobig replacement strategy. Positions are represented as 64-bit bitboards, and the hash function is computed using a single 64-bit modulo operation, giving 64-bit machines a slight edge. The alpha-beta searcher sorts moves dynamically based on the history heuristic. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingp32-u16-computationp32-u18-computation2K4K6K8K10KSE +/- 136.28, N = 3SE +/- 72.62, N = 3895181201. (CC) gcc options: -O3
OpenBenchmarking.orgKpos / sec, More Is BetterFhourstones 3.1Complex Connect-4 Solvingp32-u16-computationp32-u18-computation16003200480064008000Min: 8678.8 / Avg: 8950.57 / Max: 9104.4Min: 7976.9 / Avg: 8119.83 / Max: 8213.61. (CC) gcc options: -O3

BYTE Unix Benchmark

This is a test of BYTE. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Dhrystone 2p32-u16-computationp32-u18-computation5M10M15M20M25MSE +/- 308102.22, N = 3SE +/- 176734.41, N = 32252392623445934
OpenBenchmarking.orgLPS, More Is BetterBYTE Unix Benchmark 3.6Dhrystone 2p32-u16-computationp32-u18-computation4M8M12M16M20MMin: 21953266.4 / Avg: 22523925.77 / Max: 23010605.5Min: 23208868.6 / Avg: 23445934.3 / Max: 23791524.5

SciMark

This test runs the ANSI C version of SciMark 2.0, which is a benchmark for scientific and numerical computing developed by programmers at the National Institute of Standards and Technology. This test is made up of Fast Foruier Transform, Jacobi Successive Over-relaxation, Monte Carlo, Sparse Matrix Multiply, and dense LU matrix factorization benchmarks. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositep32-u16-computationp32-u18-computation90180270360450SE +/- 1.19, N = 3SE +/- 3.93, N = 34093931. (CC) gcc options: -lm
OpenBenchmarking.orgMflops, More Is BetterSciMark 2.0Compositep32-u16-computationp32-u18-computation70140210280350Min: 407.88 / Avg: 409.41 / Max: 411.75Min: 385.21 / Avg: 393.05 / Max: 397.421. (CC) gcc options: -lm

Crafty

This is a performance test of Crafty, an advanced open-source chess engine. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Timep32-u16-computationp32-u18-computation1.1M2.2M3.3M4.4M5.5MSE +/- 7845.00, N = 3SE +/- 2482.41, N = 3497081547609801. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm
OpenBenchmarking.orgNodes Per Second, More Is BetterCrafty 25.2Elapsed Timep32-u16-computationp32-u18-computation900K1800K2700K3600K4500KMin: 4961271 / Avg: 4970815 / Max: 4986372Min: 4758133 / Avg: 4760980 / Max: 47659261. (CC) gcc options: -pthread -lstdc++ -fprofile-use -lm

TSCP

This is a performance test of TSCP, Tom Kerrigan's Simple Chess Program, which has a built-in performance benchmark. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNodes Per Second, More Is BetterTSCP 1.81AI Chess Performancep32-u16-computationp32-u18-computation200K400K600K800K1000KSE +/- 669.94, N = 5SE +/- 1461.85, N = 58684638651961. (CC) gcc options: -O3 -march=native
OpenBenchmarking.orgNodes Per Second, More Is BetterTSCP 1.81AI Chess Performancep32-u16-computationp32-u18-computation150K300K450K600K750KMin: 866003 / Avg: 868463 / Max: 870107Min: 860590 / Avg: 865196.4 / Max: 8687351. (CC) gcc options: -O3 -march=native

dcraw

This test times how long it takes to convert several high-resolution RAW NEF image files to PPM image format using dcraw. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversionp32-u16-computationp32-u18-computation1632486480SE +/- 0.08, N = 3SE +/- 0.15, N = 372.3773.381. (CC) gcc options: -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterdcrawRAW To PPM Image Conversionp32-u16-computationp32-u18-computation1428425670Min: 72.22 / Avg: 72.37 / Max: 72.46Min: 73.12 / Avg: 73.38 / Max: 73.651. (CC) gcc options: -lm

Minion

Minion is an open-source constraint solver that is designed to be very scalable. This test profile uses Minion's integrated benchmarking problems to solve. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Solitairep32-u16-computationp32-u18-computation306090120150SE +/- 1.39, N = 12SE +/- 0.14, N = 31161191. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic
OpenBenchmarking.orgSeconds, Fewer Is BetterMinion 1.8Solitairep32-u16-computationp32-u18-computation20406080100Min: 111.35 / Avg: 115.9 / Max: 128.88Min: 118.44 / Avg: 118.7 / Max: 118.931. (CXX) g++ options: -std=gnu++11 -O3 -fomit-frame-pointer -rdynamic

Sudokut

This is a test of Sudokut, which is a Sudoku puzzle solver written in Tcl. This test measures how long it takes to solve 100 Sudoku puzzles. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timep32-u16-computationp32-u18-computation48121620SE +/- 0.09, N = 3SE +/- 0.09, N = 317.9717.47
OpenBenchmarking.orgSeconds, Fewer Is BetterSudokut 0.4Total Timep32-u16-computationp32-u18-computation510152025Min: 17.86 / Avg: 17.97 / Max: 18.15Min: 17.36 / Avg: 17.47 / Max: 17.65