NAMD On AMD Threadripper

AMD Ryzen Threadripper 2950X 16-Core testing with a MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS) and NV136 6144MB on Ubuntu 18.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1809198-RA-NAMDONAMD32
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
Threadripper 2950X
September 19 2018
  4 Minutes

Threadripper 2950X

Processor: AMD Ryzen Threadripper 2950X 16-Core @ 2.57GHz (16 Cores / 32 Threads), Motherboard: MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS), Chipset: AMD Family 17h, Memory: 32768MB, Disk: 525GB 2115 + Samsung SSD 970 EVO 250GB, Graphics: NV136 6144MB, Audio: Realtek ALC1220, Monitor: ASUS PB278, Network: Intel I211 Gigabit Connection + Intel Device 2526

OS: Ubuntu 18.04, Kernel: 4.15.0-34-generic (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, OpenGL: 4.3 Mesa 18.0.5, Compiler: GCC 7.3.0, File-System: ext4, Screen Resolution: 2560x1440

Security Notes: __user pointer sanitization + Full AMD retpoline IBPB + SSB disabled via prctl and seccomp

NAMD On AMD ThreadripperOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 2950X 16-Core @ 2.57GHz (16 Cores / 32 Threads)MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS)AMD Family 17h32768MB525GB 2115 + Samsung SSD 970 EVO 250GBNV136 6144MBRealtek ALC1220ASUS PB278Intel I211 Gigabit Connection + Intel Device 2526Ubuntu 18.044.15.0-34-generic (x86_64)GNOME Shell 3.28.3X Server 1.19.6modesetting 1.19.64.3 Mesa 18.0.5GCC 7.3.0ext42560x1440ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen ResolutionNAMD On AMD Threadripper BenchmarksSystem Logs- __user pointer sanitization + Full AMD retpoline IBPB + SSB disabled via prctl and seccomp

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.13b1ATPase Simulation - 327,506 AtomsThreadripper 2950X0.28740.57480.86221.14961.437SE +/- 0.00325, N = 31.27752

Threadripper 2950X

Processor: AMD Ryzen Threadripper 2950X 16-Core @ 2.57GHz (16 Cores / 32 Threads), Motherboard: MSI MEG X399 CREATION (MS-7B92) v1.0 (1.10 BIOS), Chipset: AMD Family 17h, Memory: 32768MB, Disk: 525GB 2115 + Samsung SSD 970 EVO 250GB, Graphics: NV136 6144MB, Audio: Realtek ALC1220, Monitor: ASUS PB278, Network: Intel I211 Gigabit Connection + Intel Device 2526

OS: Ubuntu 18.04, Kernel: 4.15.0-34-generic (x86_64), Desktop: GNOME Shell 3.28.3, Display Server: X Server 1.19.6, Display Driver: modesetting 1.19.6, OpenGL: 4.3 Mesa 18.0.5, Compiler: GCC 7.3.0, File-System: ext4, Screen Resolution: 2560x1440

Security Notes: __user pointer sanitization + Full AMD retpoline IBPB + SSB disabled via prctl and seccomp

Testing initiated at 19 September 2018 13:39 by user phoronix.