2014ubuntu14.04genericBIO

Running pts/hmmer-1.1.0, pts/mafft-1.4.0, pts/mrbayes-1.2.0 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 1410285-KH-2014UBUNT58
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Bioinformatics 3 Tests
C/C++ Compiler Tests 3 Tests
CPU Massive 3 Tests
HPC - High Performance Computing 3 Tests
Scientific Computing 3 Tests

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2014ubuntu14.04genericBIO
October 28 2014
 
2014ubuntu14.04lowlatencyBIO
October 28 2014
 
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2014ubuntu14.04genericBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

2014ubuntu14.04lowlatencyBIO

OS: Ubuntu 14.04, Kernel: 3.13.0-37-lowlatency (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

2014ubuntu14.04genericBIOOpenBenchmarking.orgPhoronix Test SuiteIntel Core i3-2125 @ 3.30GHz (4 Cores)MSI H67MA-E45 (MS-7678) v1.0Intel 2nd Generation Core Family DRAM24576MB80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0Intel HD 3000 (1100MHz)C-Media CMI8788Realtek RTL8111/8168/8411Ubuntu 14.043.13.0-37-generic (x86_64)3.13.0-37-lowlatency (x86_64)GNOME Shell 3.12.2X Server 1.15.1intel 2.99.9103.1 Mesa 10.1.3GCC 4.8.2ext41920x1200ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelsDesktopDisplay ServerDisplay DriverOpenGLCompilerFile-SystemScreen Resolution2014ubuntu14.04genericBIO BenchmarksSystem Logs- --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v - Scaling Governor: acpi-cpufreq ondemand

Timed HMMer Search

This test searches through the Pfam database of profile hidden markov models. The search finds the domain structure of Drosophila Sevenless protein. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO612182430SE +/- 0.01, N = 3SE +/- 0.06, N = 322.7223.061. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed HMMer Search 2.3.2Pfam Database Search2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO510152025Min: 22.7 / Avg: 22.72 / Max: 22.74Min: 22.95 / Avg: 23.06 / Max: 23.161. (CC) gcc options: -O2 -pthread -lhmmer -lsquid -lm

Timed MAFFT Alignment

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO3691215SE +/- 0.30, N = 6SE +/- 0.05, N = 311.6111.761. (CC) gcc options: -O3 -lm -lpthread
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 6.864Multiple Sequence Alignment2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO3691215Min: 10.68 / Avg: 11.61 / Max: 12.61Min: 11.66 / Avg: 11.76 / Max: 11.811. (CC) gcc options: -O3 -lm -lpthread

Timed MrBayes Analysis

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO612182430SE +/- 0.02, N = 3SE +/- 0.03, N = 326.4926.10
OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MrBayes Analysis 3.1.2Primate Phylogeny Analysis2014ubuntu14.04genericBIO2014ubuntu14.04lowlatencyBIO612182430Min: 26.45 / Avg: 26.49 / Max: 26.52Min: 26.06 / Avg: 26.1 / Max: 26.16

2014ubuntu14.04genericBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-generic (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 28 October 2014 11:13 by user koschi.

2014ubuntu14.04lowlatencyBIO

Processor: Intel Core i3-2125 @ 3.30GHz (4 Cores), Motherboard: MSI H67MA-E45 (MS-7678) v1.0, Chipset: Intel 2nd Generation Core Family DRAM, Memory: 24576MB, Disk: 80GB INTEL SSDSA2M080 + 320GB Western Digital WD3200BEKT-0, Graphics: Intel HD 3000 (1100MHz), Audio: C-Media CMI8788, Network: Realtek RTL8111/8168/8411

OS: Ubuntu 14.04, Kernel: 3.13.0-37-lowlatency (x86_64), Desktop: GNOME Shell 3.12.2, Display Server: X Server 1.15.1, Display Driver: intel 2.99.910, OpenGL: 3.1 Mesa 10.1.3, Compiler: GCC 4.8.2, File-System: ext4, Screen Resolution: 1920x1200

Compiler Notes: --build=x86_64-linux-gnu --disable-browser-plugin --disable-libmudflap --disable-werror --enable-checking=release --enable-clocale=gnu --enable-gnu-unique-object --enable-gtk-cairo --enable-java-awt=gtk --enable-java-home --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-multiarch --enable-nls --enable-objc-gc --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-arch-directory=amd64 --with-multilib-list=m32,m64,mx32 --with-tune=generic -v
Processor Notes: Scaling Governor: acpi-cpufreq ondemand

Testing initiated at 28 October 2014 11:25 by user koschi.