RELION
RELION - REgularised LIkelihood OptimisatioN - is a stand-alone computer program for Maximum A Posteriori refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy (cryo-EM). It is developed in the research group of Sjors Scheres at the MRC Laboratory of Molecular Biology.
To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark relion.
Project Site
www3.mrc-lmb.cam.ac.ukSource Repository
github.comTest Created
13 January 2021Last Updated
19 June 2023Test Maintainer
Michael LarabelTest Type
ProcessorAverage Install Time
10 Minutes, 36 SecondsAverage Run Time
1 Hour, 16 Minutes, 9 SecondsTest Dependencies
OpenMPI + FFTW + Git + CMake + TIFF Image + C/C++ Compiler ToolchainAccolades
20k+ DownloadsSupported Platforms
** Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
*** Test profile page view reporting began March 2021.
Data updated weekly as of 13 April 2024.
Suites Using This Test
Performance Metrics
Analyze Test Configuration:RELION 4.0.1
Test: Basic - Device: CPU
OpenBenchmarking.org metrics for this test profile configuration based on 88 public results since 19 June 2023 with the latest data as of 9 February 2024.
Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.
Based on OpenBenchmarking.org data, the selected test / test configuration (RELION 4.0.1 - Test: Basic - Device: CPU) has an average run-time of 41 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.
Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 1.8%.
Notable Instruction Set Usage
Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.
Found on Intel processors since Sandy Bridge (2011).
Found on AMD processors since Bulldozer (2011).
Found on Intel processors since Haswell (2013).
Found on AMD processors since Excavator (2016).
Found on Intel processors since Haswell (2013).
Found on AMD processors since Bulldozer (2011).
This test profile binary relies on the shared libraries libmpi.so.40, libtiff.so.5, libfftw3.so.3, libm.so.6, libgomp.so.1, libc.so.6, libopen-pal.so.40, libopen-rte.so.40, libhwloc.so.15, libwebp.so.7, libzstd.so.1, liblzma.so.5, libjbig.so.0, libjpeg.so.8, libdeflate.so.0, libz.so.1, libudev.so.1.
Tested CPU Architectures
This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.
Recent Test Results
Compare
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2 Systems - 3 Benchmark Results |
ARMv8 Neoverse-V2 - Quanta Cloud QuantaGrid S74G-2U 1S7GZ9Z0000 S7G MB - 1 x 480GB DRAM-6400MT Ubuntu 23.10 - 6.8.0-060800rc3daily20240208-generic-64k - GCC 13.2.0 |
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1 System - 3 Benchmark Results |
ARMv8 Neoverse-V2 - Quanta Cloud QuantaGrid S74G-2U 1S7GZ9Z0000 S7G MB - 1 x 480GB DRAM-6400MT Ubuntu 23.10 - 6.8.0-060800rc3daily20240208-generic-64k - GCC 13.2.0 |
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1 System - 21 Benchmark Results |
AMD EPYC 7402P 24-Core - Supermicro H11SSL-i v2.00 - AMD Starship Ubuntu 22.04 - 5.15.0-89-generic - GNOME Shell 42.9 |
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1 System - 650 Benchmark Results |
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