Timed MrBayes Analysis

This test performs a bayesian analysis of a set of primate genome sequences in order to estimate their phylogeny.

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark mrbayes.

Project Site

github.com

Test Created

6 December 2010

Last Updated

5 May 2021

Test Maintainer

Andrew Schofield

Test Type

Processor

Average Install Time

1 Minute, 4 Seconds

Average Run Time

24 Minutes, 20 Seconds

Test Dependencies

C/C++ Compiler Toolchain + OpenMPI

Accolades

200k+ Downloads

Supported Platforms

* Uploading of benchmark result data to OpenBenchmarking.org is always optional (opt-in) via the Phoronix Test Suite for users wishing to share their results publicly.
** Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
*** Test profile page view reporting began March 2021.
Data updated weekly as of 27 September 2023.

Revision History

pts/mrbayes-1.5.0 [View Source] Wed, 05 May 2021 14:34:45 GMT
Increase ngen size.

pts/mrbayes-1.4.0 [View Source] Fri, 11 Oct 2019 11:45:36 GMT
Update against upstream, add Windows support.

pts/mrbayes-1.3.2 [View Source] Sun, 26 Aug 2018 17:06:48 GMT
Update download links.

pts/mrbayes-1.3.1 [View Source] Wed, 07 Feb 2018 13:41:43 GMT
Use built-in mpich/mpi, add SHA256 for download file.

pts/mrbayes-1.3.0 [View Source] Sat, 09 Sep 2017 14:07:59 GMT
Fix for higher core count CPUs

pts/mrbayes-1.2.0 [View Source] Mon, 06 Dec 2010 14:57:53 GMT
Initial import into OpenBenchmarking.org

Suites Using This Test

C/C++ Compiler Tests

HPC - High Performance Computing

CPU Massive

Scientific Computing

MPI Benchmarks

Bioinformatics

Performance Metrics

Analyze Test Configuration:

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

OpenBenchmarking.org metrics for this test profile configuration based on 970 public results since 5 May 2021 with the latest data as of 22 September 2023.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component

Percentile Rank

# Compatible Public Results

Seconds (Average)

AMD Ryzen 7 7700X 8-Core

100th

66 ^{+/- 1}

AMD Ryzen 9 7950X 16-Core

98th

67 ^{+/- 2}

AMD Ryzen 5 7600X 6-Core

98th

AMD Ryzen 9 7900X 12-Core

97th

69 ^{+/- 1}

AMD Ryzen 9 7950X3D 16-Core

96th

Intel Core i7-12700K

95th

73 ^{+/- 1}

AMD Ryzen 9 7900 12-Core

95th

74 ^{+/- 2}

Intel Core i9-11900K

93rd

82 ^{+/- 10}

AMD Ryzen 7 5800X3D 8-Core

91st

84 ^{+/- 1}

AMD Ryzen 5 5600G

91st

84 ^{+/- 2}

AMD Ryzen 7 5800X 8-Core

91st

84 ^{+/- 3}

AMD Ryzen 5 5600X 6-Core

91st

85 ^{+/- 8}

AMD EPYC 72F3 8-Core

87th

89 ^{+/- 4}

AMD Ryzen 7 5700G

85th

91 ^{+/- 3}

AMD Ryzen 9 5950X 16-Core

83rd

94 ^{+/- 3}

Intel Core i9-10900K

82nd

AMD EPYC 7373X 16-Core

80th

2 x AMD EPYC 7373X 16-Core

80th

101 ^{+/- 1}

AMD EPYC 7F52 16-Core

78th

104

AMD EPYC 75F3 32-Core

78th

104

AMD Ryzen 9 3950X 16-Core

78th

104 ^{+/- 2}

Mid-Tier

75th

> 105

Intel Core i5-10600K

75th

105 ^{+/- 1}

AMD Ryzen 5 3600XT 6-Core

75th

105

2 x AMD EPYC 75F3 32-Core

75th

105

AMD Ryzen 7 3700X 8-Core

75th

106

AMD Ryzen 9 3900XT 12-Core

74th

107 ^{+/- 1}

AMD EPYC 7F32 8-Core

74th

107

AMD Ryzen 9 3900X 12-Core

74th

107 ^{+/- 5}

AMD Ryzen Threadripper 3970X 32-Core

73rd

109

Intel Core i9-9900KS

71st

112 ^{+/- 1}

Intel Core i5-13600K

71st

112 ^{+/- 3}

Intel Core i3-10100

69th

115

Intel Core i7-7700K

69th

115 ^{+/- 1}

2 x AMD EPYC 7453 28-Core

67th

117 ^{+/- 2}

Intel Core i7-8086K

66th

120

Intel Core i7-8700K

65th

121

Intel Core i9-13900K

64th

124 ^{+/- 13}

Intel Core i5-13400

64th

125 ^{+/- 1}

Intel Xeon Gold 6346

62nd

128 ^{+/- 1}

2 x Intel Xeon Gold 6346

62nd

128 ^{+/- 1}

Intel Core i5-7600K

61st

130

Intel Xeon E3-1275 v6

61st

130

AMD Ryzen 5 3400G

60th

131 ^{+/- 3}

Intel Core i7-7740K

60th

131

AMD Ryzen 7 3800XT 8-Core

60th

133

Intel Core i7-10750H

60th

133 ^{+/- 8}

AMD Ryzen 5 4500U

59th

136 ^{+/- 5}

Intel Core i3-7100

58th

137 ^{+/- 6}

Intel Core i5-8400

58th

137

Intel Xeon Gold 6342

56th

139

AMD EPYC 7763 64-Core

56th

140 ^{+/- 3}

2 x Intel Xeon Gold 6342

54th

141

Intel Xeon E3-1280 v5

54th

141 ^{+/- 1}

2 x AMD EPYC 7763 64-Core

53rd

142 ^{+/- 1}

AMD EPYC 7713 64-Core

52nd

143 ^{+/- 5}

AMD Ryzen 5 2400G

52nd

143 ^{+/- 8}

Intel Xeon E-2288G

51st

144

Intel Core i3-8100

51st

144

AMD Ryzen 3 1300X

51st

144 ^{+/- 2}

Median

50th

145

Intel Xeon E3-1245 v5

50th

145

Intel Core i7-1165G7

48th

148 ^{+/- 12}

2 x AMD EPYC 7773X 64-Core

48th

149 ^{+/- 17}

2 x Intel Xeon Platinum 8362

48th

149 ^{+/- 2}

AMD Ryzen 7 4700U

47th

151 ^{+/- 2}

AMD EPYC 7742 64-Core

45th

154

Intel Xeon E3-1270 v5

43rd

156 ^{+/- 1}

AMD Ryzen 7 2700 Eight-Core

42nd

157 ^{+/- 4}

Intel Core i5-6500

41st

158 ^{+/- 1}

2 x AMD EPYC 7742 64-Core

41st

158 ^{+/- 1}

AMD Ryzen 7 1700 Eight-Core

40th

159 ^{+/- 13}

Intel Xeon E3-1260L v5

38th

167 ^{+/- 1}

Intel Xeon Platinum 8380

37th

168 ^{+/- 1}

2 x Intel Xeon Platinum 8380

35th

171 ^{+/- 11}

AMD Ryzen Threadripper 2970WX 24-Core

34th

172 ^{+/- 1}

Intel Core i3-4130

34th

173 ^{+/- 1}

Intel Core i7-6800K

32nd

176 ^{+/- 4}

Intel Core i9-7980XE

31st

178 ^{+/- 1}

AMD Ryzen 3 3200U

30th

179 ^{+/- 1}

Intel Core i7-9750H

30th

179 ^{+/- 3}

AMD Ryzen Threadripper 2950X 16-Core

29th

182 ^{+/- 13}

Intel Core i7-4770K

29th

184 ^{+/- 2}

Intel Xeon E5-2687W v3

28th

186 ^{+/- 2}

Low-Tier

25th

> 192

Intel Core i7-5960X

25th

192 ^{+/- 2}

Intel Xeon E3-1235L v5

25th

192 ^{+/- 1}

2 x Intel Xeon Platinum 8280

25th

192 ^{+/- 2}

Intel Core i7-10700T

25th

192

Intel Xeon E3-1231 v3

24th

194

Apple M2

23rd

196 ^{+/- 22}

Intel Xeon Gold 6226R

23rd

196 ^{+/- 6}

Intel Core i7-8565U

22nd

202 ^{+/- 10}

2 x AMD EPYC 7601 32-Core

22nd

209 ^{+/- 4}

Intel Core i7-4960X

20th

217 ^{+/- 4}

Intel Core i7-3770K

20th

218 ^{+/- 2}

2 x Intel Xeon Gold 5220R

20th

219 ^{+/- 8}

Apple M1

17th

242 ^{+/- 2}

Ampere Altra ARMv8 Neoverse-N1 160-Core

14th

296 ^{+/- 2}

Intel Xeon E5-2609 v4

14th

302 ^{+/- 1}

Intel Core i7-2700K

12th

328 ^{+/- 3}

Intel Xeon Silver 4216

11th

368 ^{+/- 2}

Intel Core i7-9850H

9th

495 ^{+/- 7}

Intel Xeon W-3235

8th

537 ^{+/- 6}

Intel Xeon W-2123

7th

572 ^{+/- 7}

4 x AMD Opteron 8378

6th

599 ^{+/- 2}

Ampere eMAG ARMv8 32-Core

3rd

1221

Based on OpenBenchmarking.org data, the selected test / test configuration (Timed MrBayes Analysis 3.2.7 - Primate Phylogeny Analysis) has an average run-time of 13 minutes. By default this test profile is set to run at least 3 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

Based on public OpenBenchmarking.org results, the selected test / test configuration has an average standard deviation of 0.5%.

Does It Scale Well With Increasing Cores?

No, based on the automated analysis of the collected public benchmark data, this test / test settings does not generally scale well with increasing CPU core counts. Data based on publicly available results for this test / test settings, separated by vendor, result divided by the reference CPU clock speed, grouped by matching physical CPU core count, and normalized against the smallest core count tested from each vendor for each CPU having a sufficient number of test samples and statistically significant data.

Notable Instruction Set Usage

Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.

Instruction Set

Support

Instructions Detected

SSE 4.2 (SSE4_2)

Used by default on supported hardware.
Found on Intel processors since at least 2010.
Found on AMD processors since Bulldozer (2011).

POPCNT

Advanced Vector Extensions (AVX)

Used by default on supported hardware.
Found on Intel processors since Sandy Bridge (2011).
Found on AMD processors since Bulldozer (2011).

VZEROUPPER VBROADCASTSD VPERMILPD VBROADCASTSS VEXTRACTF128 VINSERTF128

Advanced Vector Extensions 2 (AVX2)

Used by default on supported hardware.
Found on Intel processors since Haswell (2013).
Found on AMD processors since Excavator (2016).

VEXTRACTI128 VPBROADCASTQ VPBROADCASTD VINSERTI128 VPERMQ VPERMD VPERM2I128 VPERMPD VPGATHERQD VPGATHERDD VPGATHERQQ VGATHERQPD VGATHERDPD VPBROADCASTB

Advanced Vector Extensions 512 (AVX512)

Used by default on supported hardware.

(ZMM REGISTER USE)

FMA (FMA)

Used by default on supported hardware.
Found on Intel processors since Haswell (2013).
Found on AMD processors since Bulldozer (2011).

VFMADD231PS

The test / benchmark does honor compiler flag changes.

Last automated analysis: 18 January 2022

This test profile binary relies on the shared libraries libm.so.6, libreadline.so.8, libc.so.6, libtinfo.so.6.

Tested CPU Architectures

This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.

CPU Architecture

Kernel Identifier

Verified On

Intel / AMD x86 64-bit

x86_64

(Many Processors)

Itanium 64-bit

ia64

2 x Madison

ARMv7 32-bit

armv7l

ARMv7 Cortex-A72 4-Core

ARMv8 64-bit

arm64

Apple M1, Apple M1 Pro

DEC Alpha

alpha

Alpha

ARMv8 64-bit

aarch64

ARMv8, ARMv8 Cortex-A72, ARMv8 Cortex-A72 4-Core, ARMv8 Neoverse-N1, ARMv8 Neoverse-N1 80-Core, ARMv8 Neoverse-V1, Ampere ARMv8 Neoverse-N1 160-Core, Ampere ARMv8 Neoverse-N1 256-Core, Ampere Altra ARMv8 Neoverse-N1 160-Core, Ampere eMAG ARMv8 32-Core, Apple M2, Rockchip ARMv8 Cortex-A76 4-Core

AdanaKebab 1 System - 8 Benchmark Results	Intel Core i5-4570 - Dell 0PC5F7 - Intel 4th Gen Core DRAM Ubuntu 20.04 - 5.15.0-83-generic - GNOME Shell 3.36.9
1806117-FO-MERGE885941 1 System - 52 Benchmark Results	Rockchip ARMv8 Cortex-A76 - FriendlyElec NanoPC-T6 - 16GB Ubuntu 22.04 - 5.10.160 - GNOME Shell 42.9
Mrbayes test 1 System - 1 Benchmark Result	AMD Ryzen 5 3500U - 3072MB - Virtual Disk + 1100GB Virtual Disk Ubuntu 20.04 - 5.15.90.1-microsoft-standard-WSL2 - Wayland
mrbayes-gads 1 System - 1 Benchmark Result	Intel Core i7-1065G7 - Dell 09PY2G - Intel Ice Lake-LP DRAM Fedora Linux 38 - 6.2.9-300.fc38.x86_64 - Budgie 10.7.1
MrBayes Analysis 1 System - 1 Benchmark Result	Intel Celeron N3050 - Acer Aspire ES1-531 - Intel Atom Ubuntu 18.04 - 5.4.0-150-generic - GNOME Shell 3.28.4
prueba6 1 System - 1 Benchmark Result	Intel Core i3-8130U - 6GB - 0GB Virtual Disk + 2GB Virtual Disk + 1100GB Virtual Disk Ubuntu 22.04 - 5.15.90.1-microsoft-standard-WSL2 - Wayland
test 7 1 System - 1 Benchmark Result	Intel Celeron J4025 - HP 87F9 - Intel Gemini Lake Ubuntu 20.04 - 5.15.0-71-generic - GNOME Shell 3.36.9
MrBayes 1 System - 1 Benchmark Result	AMD Ryzen 5 5600X 6-Core - 8GB - 2 x 275GB Virtual Disk Ubuntu 20.04 - 5.10.16.3-microsoft-standard-WSL2 - 1.1.182
Benchmark mrbayes 1 System - 1 Benchmark Result	Intel Celeron N3060 - LENOVO Paris G 5A6 - Intel Atom Linuxmint 21.2 - 5.15.0-78-generic - Xfce 4.18
Prueba 7 Timed MrBayes Analysis 1 System - 1 Benchmark Result	Intel Core i7-8550U - 4096MB - 0GB Virtual Disk + Virtual Disk + 1100GB Virtual Disk Ubuntu 22.04 - 5.15.90.1-microsoft-standard-WSL2 - 4.1 Mesa 23.0.4-0ubuntu1~22.04.1
Timed_MrByaes_Analysis01 1 System - 1 Benchmark Result	AMD Ryzen 5 5500U - HUAWEI NBM-WXX9-PCB-B2 - AMD Renoir Ubuntu 22.10 - 5.19.0-46-generic - KDE Plasma 5.25.5
Timed MrBayes Analysis 1 System - 1 Benchmark Result	AMD Ryzen 5 5500U - LENOVO LNVNB161216 - AMD Renoir Arch Linux - 6.4.10-arch1-1 - KDE Plasma 5.27.7
MrBayes1 1 System - 1 Benchmark Result	Intel Core i5-10400F - Oracle VirtualBox v1.2 - Intel 440FX 82441FX PMC Ubuntu 23.04 - 6.2.0-27-generic - GNOME Shell 44.0
mrbayes test 1 System - 1 Benchmark Result	AMD Athlon 3000G - BIOSTAR B450MH - AMD Raven Ubuntu 22.04 - 6.2.0-26-generic - GNOME Shell 42.9
fsdf 1 System - 1 Benchmark Result	Intel Core i5-1235U - LENOVO LNVNB161216 - Intel Alder Lake PCH Ubuntu 22.04 - 6.2.0-26-generic - GNOME Shell 42.9

1235 may 3 Systems - 37 Benchmark Results	Intel Xeon E3-1235L v5 - ASRockRack C236M WS - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.4
3700X Mayt 3 Systems - 78 Benchmark Results	AMD Ryzen 7 3700X 8-Core - Gigabyte A320M-S2H-CF - AMD Starship Ubuntu 20.04 - 5.8.1-050801-generic - GNOME Shell 3.36.4
tr 2970wx may 4 Systems - 11 Benchmark Results	AMD Ryzen Threadripper 2970WX 24-Core - Gigabyte X399 AORUS Gaming 7 - AMD 17h Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.4
Amazon EC2 Graviton3 Benchmark Comparison 5 Systems - 94 Benchmark Results	ARMv8 Neoverse-V1 - Amazon EC2 c7g.4xlarge - Amazon Device 0200 Ubuntu 22.04 - 5.15.0-1004-aws - GCC 11.2.0
Ryzen 9 5950X Clang 12 vs. GCC 11 Benchmarks Featured Compiler Comparison	AMD Ryzen 9 5950X 16-Core - ASUS ROG CROSSHAIR VIII HERO - AMD Starship Fedora 34 - 5.11.20-300.fc34.x86_64 - GNOME Shell 40.1
6500 May 4 Systems - 82 Benchmark Results	Intel Core i5-6500 - Gigabyte Z170M-D3H-CF - Intel Xeon E3-1200 v5 Ubuntu 20.04 - 5.9.0-050900rc7daily20200929-generic - GNOME Shell 3.36.4
AMD Ryzen 7900 Series Linux CPU Benchmarks 13 Systems - 333 Benchmark Results	Intel Core i5-12600K - ASUS ROG STRIX Z690-E GAMING WIFI - Intel Device 7aa7 Ubuntu 22.04 - 6.0.0-060000rc1daily20220820-generic - GNOME Shell 42.2
3950x may 6 Systems - 36 Benchmark Results	AMD Ryzen 9 3950X 16-Core - ASUS ROG CROSSHAIR VII HERO - AMD Starship Ubuntu 20.04 - 5.9.0-050900rc6daily20200922-generic - GNOME Shell 3.36.4
Linux Servers AlmaLinux vs. RHEL 9.0 Featured OS Comparison	2 x AMD EPYC 7773X 64-Core - AMD DAYTONA_X - AMD Starship Red Hat Enterprise Linux 9.0 - 5.14.0-70.13.1.el9_0.x86_64 - GNOME Shell 40.9
7100 june 3 Systems - 117 Benchmark Results	Intel Core i3-7100 - Gigabyte B250M-DS3H-CF - Intel Xeon E3-1200 v6 Ubuntu 20.10 - 5.8.0-48-generic - GNOME Shell 3.38.1
xeon broadwell may 2021 3 Systems - 164 Benchmark Results	Intel Xeon E5-2609 v4 - MSI X99A RAIDER - Intel Xeon E7 v4 Ubuntu 20.04 - 5.9.0-050900rc6daily20200926-generic - GNOME Shell 3.36.2
clearlinux-ryzen3-4350 6 Systems - 254 Benchmark Results	AMD Ryzen 3 PRO 4350G - ASRock B450M Pro4 - AMD Renoir Root Complex Clear Linux OS 34550 - 5.10.32-1035.native - GNOME Shell 40.0
gold may 2 Systems - 38 Benchmark Results	Intel Xeon Gold 6226R - Supermicro X11SPL-F v1.02 - Intel Sky Lake-E DMI3 Registers Ubuntu 20.10 - 5.11.0-rc4-max-boost-inv-patch - GNOME Shell 3.38.1
12700k HPC+OpenCL AVX512 performance profiling Featured Disk Comparison	Intel Core i7-12700K - MSI PRO Z690-A DDR4 - Intel Device 7aa7 Pop 21.04 - 5.15.5-76051505-generic - GNOME Shell 3.38.4
Clear Compare BSD 2 Systems - 222 Benchmark Results	Intel Core i9-10980XE - ASRock X299 Steel Legend - Intel Sky Lake-E DMI3 Registers Clear Linux OS 35320 - 5.15.4-1100.native - GNOME Shell 41.1

Timed MrBayes Analysis

Project Site

Test Created

Last Updated

Test Maintainer

Test Type

Average Install Time

Average Run Time

Test Dependencies

Accolades

Supported Platforms

Revision History

Suites Using This Test

Performance Metrics

Timed MrBayes Analysis 3.2.7

Primate Phylogeny Analysis

Does It Scale Well With Increasing Cores?

Notable Instruction Set Usage

Tested CPU Architectures

Recent Test Results

Most Popular Test Results