ECP-CANDLE

The CANDLE benchmark codes implement deep learning architectures relevant to problems in cancer. These architectures address problems at different biological scales, specifically problems at the molecular, cellular and population scales.

Learn more about this test at the upstream project site: https://github.com/ECP-CANDLE/Benchmarks.

This utility test profile is maintained by Michael Larabel. This OpenBenchmarking.org test profile was created on 12 August 2020 and last updated on 23 August 2020. To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark ecp-candle.

This test has an average install time of 2 minutes, 53 seconds and an average run-time of 10 minutes, 19 seconds.

P1B234.5%P3B134.2%P3B231.2%Benchmark Option PopularityOpenBenchmarking.org

Revision History

pts/ecp-candle-1.0.1   [View Source]   23 Aug 2020 14:20 EDT
Drop P2B1 option as it seems borked for some systems.

pts/ecp-candle-1.0.0   [View Source]   12 Aug 2020 18:15 EDT
Initial commit of CANDLE cancer deep learning benchmark.

Performance Metrics

Analyze Test Configuration:

ECP-CANDLE 0.3

Benchmark: P1B2

OpenBenchmarking.org metrics for this test profile configuration based on 252 public samples since 12 August 2020 with the latest data as of 30 November 2020.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
Seconds (Average)
Mid-Tier
75th
> 38.6
Median
50th
42.3
Low-Tier
25th
> 44.5
OpenBenchmarking.orgDistribution Of Public Results - Benchmark: P1B2252 Results Range From 31 To 83 Seconds31364146515661667176818691306090120150

Based on OpenBenchmarking.org data, the selected test / test configuration (ECP-CANDLE 0.3 - Benchmark: P1B2) has an average run-time of 2 minutes. By default this test profile is set to run at least 1 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkBenchmark: P1B2Run-Time246810Min: 1 / Avg: 1 / Max: 1

Recent Test Results

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1 System - 92 Benchmark Results

AMD Ryzen 9 5900X 12-Core - ASRock X570 Taichi - AMD Starship

Ubuntu 20.04 - 5.4.0-53-generic - GNOME Shell 3.36.4

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Ubuntu 20.10 - 5.8.0-26-generic - GNOME Shell 3.38.1

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Ubuntu 20.10 - 5.8.0-26-generic - GNOME Shell 3.38.1

3 Systems - 138 Benchmark Results

Intel Xeon E3-1245 v5 - MSI C236A WORKSTATION - Intel Xeon E3-1200 v5

Ubuntu 20.04 - 5.9.0-050900rc7daily20201003-generic - GNOME Shell 3.36.4

7 Systems - 84 Benchmark Results

2 x AMD EPYC 7282 16-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 20.04 - 5.8.0-050800rc6daily20200721-generic - GNOME Shell 3.36.1

3 Systems - 259 Benchmark Results

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Ubuntu 20.04 - 5.9.0-rc4-pts-patch - GNOME Shell 3.36.4

1 System - 69 Benchmark Results

Intel Core i5-8265U - Raticate_WL - Intel Cannon Point-LP

Ubuntu 20.04 - 5.4.0-33-generic - GNOME Shell 3.36.2

1 System - 36 Benchmark Results

AMD Ryzen Threadripper 2970WX 24-Core - Gigabyte X399 AORUS Gaming 7 - AMD 17h

Ubuntu 20.04 - 5.8.0-050800-generic - GNOME Shell 3.36.3

1 System - 29 Benchmark Results

Intel Xeon E3-1275 v6 - ASUS P10S-M WS - Intel Xeon E3-1200 v6

Ubuntu 20.04 - 5.4.0-42-generic - GNOME Shell 3.36.2

1 System - 22 Benchmark Results

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Ubuntu 20.04 - 5.9.0-050900rc1daily20200819-generic - GNOME Shell 3.36.4

Most Popular Test Results

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3 Systems - 138 Benchmark Results

Intel Xeon E3-1245 v5 - MSI C236A WORKSTATION - Intel Xeon E3-1200 v5

Ubuntu 20.04 - 5.8.13-050813-generic - GNOME Shell 3.36.2

3 Systems - 44 Benchmark Results

Intel Core i9-9900K - ASRock Z390M Pro4 - Intel Cannon Lake PCH

Ubuntu 20.04 - 5.9.0-050900rc1daily20200819-generic - GNOME Shell 3.36.4

3 Systems - 259 Benchmark Results

AMD EPYC 7F72 24-Core - ASRockRack EPYCD8 - AMD Starship

Ubuntu 20.04 - 5.9.0-rc4-pts-patch - GNOME Shell 3.36.4

7 Systems - 84 Benchmark Results

2 x AMD EPYC 7252 8-Core - Supermicro H11DSi-NT v2.00 - AMD Starship

Ubuntu 20.04 - 5.8.0-050800rc6daily20200721-generic - GNOME Shell 3.36.1

3 Systems - 81 Benchmark Results

Intel Core i5-10600K - ASUS PRIME Z490M-PLUS - Intel Comet Lake PCH

Ubuntu 20.04 - 5.8.0-050800rc6daily20200726-generic - GNOME Shell 3.36.3

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