CP2K Molecular Dynamics

CP2K is an open-source molecular dynamics software package focused on quantum chemistry and solid-state physics. More details on the CP2K benchmark test cases and details can be found @ https://www.cp2k.org/performance

To run this test with the Phoronix Test Suite, the basic command is: phoronix-test-suite benchmark cp2k.

Project Site

cp2k.org

Source Repository

github.com

Test Created

15 June 2019

Last Updated

18 June 2023

Test Maintainer

Michael Larabel 

Test Type

Processor

Average Install Time

6 Minutes, 55 Seconds

Average Run Time

12 Minutes, 4 Seconds

Test Dependencies

C/C++ Compiler Toolchain + BLAS (Basic Linear Algebra Sub-Routine) + Python + Fortran + OpenMPI + CMake + HDF5

Accolades

30k+ Downloads

Supported Platforms

Supported Architectures

x86_64

Public Result Uploads *Reported Installs **Reported Test Completions **Test Profile Page Views ***OpenBenchmarking.orgEventsCP2K Molecular Dynamics Popularity Statisticspts/cp2k2019.062019.082019.102019.122020.022020.042020.062020.082020.102020.122021.022021.042021.062021.082021.102021.122022.022022.042022.062022.082022.102022.122023.022023.042023.062023.082023.102023.122024.022K4K6K8K10K
* Uploading of benchmark result data to OpenBenchmarking.org is always optional (opt-in) via the Phoronix Test Suite for users wishing to share their results publicly.
** Data based on those opting to upload their test results to OpenBenchmarking.org and users enabling the opt-in anonymous statistics reporting while running benchmarks from an Internet-connected platform.
*** Test profile page view reporting began March 2021.
Data updated weekly as of 20 February 2024.
Fayalite-FIST44.3%H20-6437.6%H2O-DFT-LS18.1%Input Option PopularityOpenBenchmarking.org

Revision History

pts/cp2k-1.4.1   [View Source]   Sun, 18 Jun 2023 11:07:29 GMT
Update against latest upstream.

pts/cp2k-1.3.0   [View Source]   Fri, 05 Nov 2021 20:06:02 GMT
Update against cp2k 8.2 upstream, fix SSMP run handling.

pts/cp2k-1.2.0   [View Source]   Fri, 09 Apr 2021 08:46:34 GMT
Update OMP handling, prep for allowing multiple input options.

pts/cp2k-1.1.0   [View Source]   Sun, 10 Jan 2021 16:08:21 GMT
Update against upstream cp2k 8.1.

pts/cp2k-1.0.0   [View Source]   Sat, 15 Jun 2019 10:14:18 GMT
Initial commit of P2K molecular dynamics software package.

Suites Using This Test

HPC - High Performance Computing

Server CPU Tests

Molecular Dynamics

Scientific Computing


Performance Metrics

Analyze Test Configuration:

CP2K Molecular Dynamics 2023.1

Input: Fayalite-FIST

OpenBenchmarking.org metrics for this test profile configuration based on 105 public results since 18 June 2023 with the latest data as of 5 November 2023.

Below is an overview of the generalized performance for components where there is sufficient statistically significant data based upon user-uploaded results. It is important to keep in mind particularly in the Linux/open-source space there can be vastly different OS configurations, with this overview intended to offer just general guidance as to the performance expectations.

Component
Percentile Rank
# Compatible Public Results
Seconds (Average)
Mid-Tier
75th
> 96
67th
3
103 +/- 5
Median
50th
107
Low-Tier
25th
> 154
22nd
4
162 +/- 2
13th
6
269 +/- 1
4th
4
293 +/- 1
2nd
4
298 +/- 27
OpenBenchmarking.orgDistribution Of Public Results - Input: Fayalite-FIST105 Results Range From 67 To 322 Seconds678399115131147163179195211227243259275291307323816243240

Based on OpenBenchmarking.org data, the selected test / test configuration (CP2K Molecular Dynamics 2023.1 - Input: Fayalite-FIST) has an average run-time of 3 minutes. By default this test profile is set to run at least 1 times but may increase if the standard deviation exceeds pre-defined defaults or other calculations deem additional runs necessary for greater statistical accuracy of the result.

OpenBenchmarking.orgMinutesTime Required To Complete BenchmarkInput: Fayalite-FISTRun-Time246810Min: 1 / Avg: 2.37 / Max: 5

Notable Instruction Set Usage

Notable instruction set extensions supported by this test, based on an automatic analysis by the Phoronix Test Suite / OpenBenchmarking.org analytics engine.

Instruction Set
Support
Instructions Detected
SSE2 (SSE2)
Used by default on supported hardware.
 
CVTSI2SD MULSD ADDSD SUBSD MOVDQU COMISD MOVDQA DIVSD MOVAPD UCOMISD ANDPD SQRTSD ORPD XORPD MAXSD MINSD CVTTSD2SI CMPLTSD ANDNPD CVTSS2SD CMPNLTSD CMPNLESD CMPLESD CVTSD2SS MOVUPD MULPD ADDPD UNPCKLPD MOVD PSRLDQ MOVHPD MOVLPD SUBPD MOVMSKPD PUNPCKLQDQ CVTPS2PD CVTPD2PS PADDQ PSHUFD PSLLDQ MOVNTI MOVNTDQ
SSE3 (SSE3)
Used by default on supported hardware.
 
LDDQU
SSSE3 (SSSE3)
Used by default on supported hardware.
 
PSHUFB PALIGNR
SSE 4.2 (SSE4_2)
Used by default on supported hardware.
Found on Intel processors since at least 2010.
Found on AMD processors since Bulldozer (2011).

 
PCMPISTRI PCMPESTRI POPCNT
Used by default on supported hardware.
Found on Intel processors since Sandy Bridge (2011).
Found on AMD processors since Bulldozer (2011).

 
VINSERTF128 VPERM2F128 VZEROUPPER VEXTRACTF128 VPERMILPS VPERMILPD VBROADCASTSD VBROADCASTSS
Advanced Vector Extensions 512 (AVX512)
Used by default on supported hardware.
 
(ZMM REGISTER USE)
FMA (FMA)
Used by default on supported hardware.
Found on Intel processors since Haswell (2013).
Found on AMD processors since Bulldozer (2011).

 
VFMADD132SS VFMADD231SS VFMADD231PS VFMADD132PS VFMADD213SS VFMADD132SD VFMADD231SD VFMADD231PD VFMADD132PD VFMADD213SD VFMSUB231SS VFNMADD132SS VFNMADD132PS VFNMADD231SS VFMSUB231PS VFNMADD231PS VFMSUB231SD VFNMADD231PD VFNMADD132SD VFMSUB231PD VFNMADD231SD
Last automated analysis: 17 January 2022

Tested CPU Architectures

This benchmark has been successfully tested on the below mentioned architectures. The CPU architectures listed is where successful OpenBenchmarking.org result uploads occurred, namely for helping to determine if a given test is compatible with various alternative CPU architectures.

CPU Architecture
Kernel Identifier
Verified On
Intel / AMD x86 64-bit
x86_64
(Many Processors)

Recent Test Results

OpenBenchmarking.org Results Compare

1 System - 1 Benchmark Result

AMD Ryzen 9 7950X3D 16-Core - MSI MPG B650I EDGE WIFI - AMD Device 14d8

Rocky Linux 8.9 - 4.18.0-513.9.1.el8_9.x86_64 - GNOME Shell 3.32.2

1 System - 31 Benchmark Results

2 x Intel Xeon Platinum 8374C - GIGABYTE MD72-HB1-00 v01000100 - Intel Device 0998

Ubuntu 22.04 - 6.2.0-36-generic - GNOME Shell 42.2

2 Systems - 358 Benchmark Results

AMD Ryzen 9 3900XT 12-Core - MSI MEG X570 GODLIKE - AMD Starship

Ubuntu 22.04 - 6.2.0-35-generic - GNOME Shell 42.2

1 System - 543 Benchmark Results

AMD Ryzen Threadripper PRO 5995WX 64-Cores - ASRock WRX80 Creator - AMD Starship

Ubuntu 22.04 - 6.2.0-33-generic - GNOME Shell 42.9

1 System - 149 Benchmark Results

AMD Ryzen 9 7900X 12-Core - ASRock X670E Steel Legend - AMD Device 14d8

Ubuntu 23.04 - 6.5.2-native - KDE Plasma 5.27.8

Find More Test Results