mafft-1.6.2run

2 x Intel Xeon E5-2620 v2 testing with a ASUS Z9PE-D8 WS (5503 BIOS) and ASPEED on CentOS Stream 9 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2410248-NE-MAFFT162R46
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
debug
July 14
  6 Minutes
NoGVNO2
July 15
  4 Minutes
NoGVNO3
July 16
  3 Minutes
OptNoSimplO2
July 18
  4 Minutes
OptNoSimplO3
July 19
  4 Minutes
OptSimplO2
July 22
  3 Minutes
OptSimplO3
July 23
  5 Minutes
OptRedO2
July 27
  4 Minutes
OptRedO3
July 28
  4 Minutes
2 x Intel Xeon E5-2620 v2
August 06
  19 Minutes
OptPREO2
August 07
  3 Minutes
GVNO2
August 08
  6 Minutes
NewGVNO2
August 09
  2 Minutes
OptPREO3
August 13
  3 Minutes
NewGVNO333
August 29
  3 Minutes
GVNO3
August 30
  3 Minutes
PessimisticO3
September 05
  3 Minutes
PessimisticO2
September 06
  4 Minutes
PessimisticNewGVNO2
September 07
  3 Minutes
PessimisticNewGVNO3
September 08
  4 Minutes
NewGVNO2-debug
October 24
  3 Minutes
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  5 Minutes

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mafft-1.6.2runProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkMonitorOSKernelDisplay ServerDisplay DriverCompilerFile-SystemScreen ResolutiondebugNoGVNO2NoGVNO3OptNoSimplO2OptNoSimplO3OptSimplO2OptSimplO3OptRedO2OptRedO32 x Intel Xeon E5-2620 v2OptPREO2GVNO2NewGVNO2OptPREO3NewGVNO333GVNO3PessimisticO3PessimisticO2PessimisticNewGVNO2PessimisticNewGVNO3NewGVNO2-debug2 x Intel Xeon E5-2620 v2 @ 2.60GHz (12 Cores / 24 Threads)ASUS Z9PE-D8 WS (5503 BIOS)Intel Xeon E7 v2/Xeon32GB256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00PASPEEDRealtek ALC8982 x Intel 82574LCentOS Stream 95.14.0-467.el9.x86_64 (x86_64)X ServerNVIDIAGCC 11.4.1 20231218 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.2ext41024x7682000GB Western Digital WD20EARX-00P + 256GB Samsung SSD 850ASUS VW1905.14.0-474.el9.x86_64 (x86_64)5.14.0-480.el9.x86_64 (x86_64)256GB Samsung SSD 850 + 2000GB Western Digital WD20EARX-00P5.14.0-496.el9.x86_64 (x86_64)GCC 11.5.0 20240719 + PGI Compiler 16.10-0 + LLVM 3.1 + CUDA 11.25.14.0-503.el9.x86_64 (x86_64)5.14.0-514.el9.x86_64 (x86_64)OpenBenchmarking.orgKernel Details- Transparent Huge Pages: alwaysEnvironment Details- debug: CXXFLAGS=-O2 CFLAGS=-O2- NoGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- NoGVNO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -disable-gvn=true"- OptNoSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false"- OptNoSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=false"- OptSimplO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true"- OptSimplO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=false -mllvm -enable-newgvn-pre=false -mllvm -enable-newgvn-simpl=true"- OptRedO2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false"- OptRedO3: CXXFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false" CFLAGS="-O3 -mllvm -enable-newgvn -mllvm -enable-phi-of-ops=true -mllvm -enable-newgvn-simpl=true -mllvm -enable-newgvn-pre=false"- 2 x Intel Xeon E5-2620 v2: CXXFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-newgvn-pre=false" CFLAGS="-O2 -mllvm -enable-newgvn -mllvm -enable-newgvn-pre=false"- OptPREO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- GVNO2: CXXFLAGS=-O2 CFLAGS=-O2- NewGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- OptPREO3: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- NewGVNO333: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- GVNO3: CXXFLAGS=-O3 CFLAGS=-O3- PessimisticO3: CXXFLAGS=-O3 CFLAGS=-O3- PessimisticO2: CXXFLAGS=-O2 CFLAGS=-O2- PessimisticNewGVNO2: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"- PessimisticNewGVNO3: CXXFLAGS="-O3 -mllvm -enable-newgvn" CFLAGS="-O3 -mllvm -enable-newgvn"- NewGVNO2-debug: CXXFLAGS="-O2 -mllvm -enable-newgvn" CFLAGS="-O2 -mllvm -enable-newgvn"Compiler Details- Optimized build with assertions; Built Apr 11 2013 (07:43:48); Default target: i386-pc-linux-gnu; Host CPU: i686Processor Details- Scaling Governor: intel_cpufreq conservative - CPU Microcode: 0x42eSecurity Details- gather_data_sampling: Not affected + itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Mitigation of PTE Inversion; VMX: conditional cache flushes SMT vulnerable + mds: Mitigation of Clear buffers; SMT vulnerable + meltdown: Mitigation of PTI + mmio_stale_data: Unknown: No mitigations + reg_file_data_sampling: Not affected + retbleed: Not affected + spec_rstack_overflow: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines; IBPB: conditional; IBRS_FW; STIBP: conditional; RSB filling; PBRSB-eIBRS: Not affected; BHI: Not affected + srbds: Not affected + tsx_async_abort: Not affected

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNAdebugPessimisticO3PessimisticO2PessimisticNewGVNO3PessimisticNewGVNO2OptSimplO3OptSimplO2OptRedO3OptRedO2OptPREO3OptPREO2OptNoSimplO3OptNoSimplO2NoGVNO3NoGVNO2NewGVNO333NewGVNO2-debugNewGVNO2GVNO3GVNO22 x Intel Xeon E5-2620 v2918273645SE +/- 0.14, N = 15SE +/- 0.49, N = 4SE +/- 0.39, N = 6SE +/- 0.40, N = 5SE +/- 0.45, N = 4SE +/- 0.36, N = 7SE +/- 0.44, N = 4SE +/- 0.43, N = 3SE +/- 0.37, N = 6SE +/- 0.48, N = 4SE +/- 0.46, N = 4SE +/- 0.41, N = 5SE +/- 0.48, N = 4SE +/- 0.42, N = 4SE +/- 0.39, N = 6SE +/- 0.43, N = 4SE +/- 0.46, N = 4SE +/- 0.51, N = 3SE +/- 0.48, N = 4SE +/- 0.33, N = 8SE +/- 0.38, N = 622.7539.3539.2739.1039.1938.8839.0339.1938.7938.7839.1239.0938.9339.2038.9338.5038.2238.8438.6738.7738.911. (CC) clang options: -std=c99 -O3 -lm -lpthread

2 x Intel Xeon E5-2620 v2: The test quit with a non-zero exit status.

OpenBenchmarking.orgBytes, Fewer Is BetterTimed MAFFT Alignment 7.471Test Install SizeNewGVNO2-debug2 x Intel Xeon E5-2620 v23K6K9K12K15K1541215416