timed mafft alignment

Timed mafft alignment

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2209166-NE-TIMEDMAFF07
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TIMED mafft alignment
September 16 2022
  25 Minutes

TIMED mafft alignment

Processor: AMD A9-9420 RADEON R5 5 COMPUTE CORES 2C+3G @ 3.00GHz (2 Cores), Motherboard: ASUS X505BA v1.0 (X505BA.317 BIOS), Chipset: AMD 15h, Memory: 4096MB, Disk: 1000GB HGST HTS541010B7, Graphics: ASUS AMD Radeon R2/R3/R4/R5 256MB (847/933MHz), Audio: AMD Device 15b3, Network: Realtek RTL8111/8168/8411 + Intel 8265 / 8275

OS: Ubuntu 22.04, Kernel: 5.15.0-47-generic (x86_64), Desktop: GNOME Shell 42.2, Display Server: X Server + Wayland, OpenGL: 4.5 Mesa 22.0.5 (LLVM 13.0.1 DRM 3.42), Vulkan: 1.3.204, Compiler: GCC 11.2.0, File-System: ext4, Screen Resolution: 1366x768

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x6006705
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

timed mafft alignmentOpenBenchmarking.orgPhoronix Test SuiteAMD A9-9420 RADEON R5 5 COMPUTE CORES 2C+3G @ 3.00GHz (2 Cores)ASUS X505BA v1.0 (X505BA.317 BIOS)AMD 15h4096MB1000GB HGST HTS541010B7ASUS AMD Radeon R2/R3/R4/R5 256MB (847/933MHz)AMD Device 15b3Realtek RTL8111/8168/8411 + Intel 8265 / 8275Ubuntu 22.045.15.0-47-generic (x86_64)GNOME Shell 42.2X Server + Wayland4.5 Mesa 22.0.5 (LLVM 13.0.1 DRM 3.42)1.3.204GCC 11.2.0ext41366x768ProcessorMotherboardChipsetMemoryDiskGraphicsAudioNetworkOSKernelDesktopDisplay ServerOpenGLVulkanCompilerFile-SystemScreen ResolutionTimed Mafft Alignment BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x6006705- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Timed MAFFT Alignment

This test performs an alignment of 100 pyruvate decarboxylase sequences. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgSeconds, Fewer Is BetterTimed MAFFT Alignment 7.471Multiple Sequence Alignment - LSU RNATIMED mafft alignment306090120150SE +/- 3.88, N = 12124.321. (CC) gcc options: -std=c99 -O3 -lm -lpthread

TIMED mafft alignment

Processor: AMD A9-9420 RADEON R5 5 COMPUTE CORES 2C+3G @ 3.00GHz (2 Cores), Motherboard: ASUS X505BA v1.0 (X505BA.317 BIOS), Chipset: AMD 15h, Memory: 4096MB, Disk: 1000GB HGST HTS541010B7, Graphics: ASUS AMD Radeon R2/R3/R4/R5 256MB (847/933MHz), Audio: AMD Device 15b3, Network: Realtek RTL8111/8168/8411 + Intel 8265 / 8275

OS: Ubuntu 22.04, Kernel: 5.15.0-47-generic (x86_64), Desktop: GNOME Shell 42.2, Display Server: X Server + Wayland, OpenGL: 4.5 Mesa 22.0.5 (LLVM 13.0.1 DRM 3.42), Vulkan: 1.3.204, Compiler: GCC 11.2.0, File-System: ext4, Screen Resolution: 1366x768

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x6006705
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + mmio_stale_data: Not affected + retbleed: Mitigation of untrained return thunk; SMT disabled + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: disabled RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 16 September 2022 02:33 by user alex.