gromacs ren

AMD Ryzen Threadripper 3990X 64-Core testing with a Gigabyte TRX40 AORUS PRO WIFI (F4p BIOS) and AMD Radeon RX 5700 8GB on Pop 22.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2205196-NE-GROMACSRE12
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A
May 19 2022
  2 Hours, 2 Minutes
B
May 19 2022
  2 Hours, 18 Minutes
C
May 19 2022
  2 Hours, 55 Minutes
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  2 Hours, 25 Minutes

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A

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301039
Java Notes: OpenJDK Runtime Environment (build 11.0.15+10-Ubuntu-0ubuntu0.22.04.1)
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

B

C

Processor: AMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads), Motherboard: Gigabyte TRX40 AORUS PRO WIFI (F4p BIOS), Chipset: AMD Starship/Matisse, Memory: 128GB, Disk: Samsung SSD 970 EVO Plus 500GB, Graphics: AMD Radeon RX 5700 8GB (1750/875MHz), Audio: AMD Navi 10 HDMI Audio, Monitor: DELL P2415Q, Network: Intel I211 + Intel Wi-Fi 6 AX200

OS: Pop 22.04, Kernel: 5.17.5-76051705-generic (x86_64), Desktop: GNOME Shell 42.0, Display Server: X Server 1.21.1.3, OpenGL: 4.6 Mesa 22.0.1 (LLVM 13.0.1 DRM 3.44), Vulkan: 1.2.204, Compiler: GCC 11.2.0, File-System: ext4, Screen Resolution: 3840x2160

gromacs renOpenBenchmarking.orgPhoronix Test SuiteAMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads)Gigabyte TRX40 AORUS PRO WIFI (F4p BIOS)AMD Starship/Matisse128GBSamsung SSD 970 EVO Plus 500GBAMD Radeon RX 5700 8GB (1750/875MHz)AMD Navi 10 HDMI AudioDELL P2415QIntel I211 + Intel Wi-Fi 6 AX200Pop 22.045.17.5-76051705-generic (x86_64)GNOME Shell 42.0X Server 1.21.1.34.6 Mesa 22.0.1 (LLVM 13.0.1 DRM 3.44)1.2.204GCC 11.2.0ext43840x2160ProcessorMotherboardChipsetMemoryDiskGraphicsAudioMonitorNetworkOSKernelDesktopDisplay ServerOpenGLVulkanCompilerFile-SystemScreen ResolutionGromacs Ren BenchmarksSystem Logs- Transparent Huge Pages: madvise- --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v - Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301039- OpenJDK Runtime Environment (build 11.0.15+10-Ubuntu-0ubuntu0.22.04.1)- itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

ABCResult OverviewPhoronix Test Suite100%100%100%100%GROMACSRenaissanceTensorFlow Lite

gromacs renrenaissance: Scala Dottyrenaissance: Rand Forestrenaissance: ALS Movie Lensrenaissance: Apache Spark ALSrenaissance: Apache Spark Bayesrenaissance: Savina Reactors.IOrenaissance: Apache Spark PageRankrenaissance: Finagle HTTP Requestsrenaissance: In-Memory Database Shootoutrenaissance: Akka Unbalanced Cobwebbed Treerenaissance: Genetic Algorithm Using Jenetics + Futurestensorflow-lite: SqueezeNettensorflow-lite: Inception V4tensorflow-lite: NASNet Mobiletensorflow-lite: Mobilenet Floattensorflow-lite: Mobilenet Quanttensorflow-lite: Inception ResNet V2gromacs: MPI CPU - water_GMX50_bareABC897.1831.117573.24063.2929.010727.03264.26388.05885.621301.33326.46265.5556636.852320.84151.903183.5284278.23.675909.0826.817664.34080.6932.710556.83284.46355.95806.321707.33332.26228.1456755.453029.34200.793112.6082936.73.675880.8828.917678.24086.2927.010593.13315.66334.95785.821944.13312.36281.5056976.553490.24326.653162.0286773.93.685OpenBenchmarking.org

Renaissance

Renaissance is a suite of benchmarks designed to test the Java JVM from Apache Spark to a Twitter-like service to Scala and other features. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Scala DottyCBA2004006008001000SE +/- 11.19, N = 15SE +/- 0.84, N = 3SE +/- 4.67, N = 3880.8909.0897.1MIN: 702.8 / MAX: 1205.94MIN: 706.19 / MAX: 1175.54MIN: 689.17 / MAX: 1180.85

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Random ForestCBA2004006008001000SE +/- 1.90, N = 3SE +/- 9.24, N = 3SE +/- 6.75, N = 3828.9826.8831.1MIN: 750.6 / MAX: 1043.35MIN: 715.93 / MAX: 1051.17MIN: 750.24 / MAX: 1057.61

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: ALS Movie LensCBA4K8K12K16K20KSE +/- 111.73, N = 3SE +/- 137.67, N = 3SE +/- 84.62, N = 317678.217664.317573.2MIN: 17465.67 / MAX: 19496.03MIN: 17427.28 / MAX: 19480.44MIN: 17405.26 / MAX: 19448.2

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Apache Spark ALSCBA9001800270036004500SE +/- 13.05, N = 3SE +/- 14.10, N = 3SE +/- 19.56, N = 34086.24080.64063.2MIN: 3939.4 / MAX: 4291.22MIN: 3920.72 / MAX: 4284.67MIN: 3892.98 / MAX: 4338.44

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Apache Spark BayesCBA2004006008001000SE +/- 3.48, N = 3SE +/- 3.30, N = 3SE +/- 2.48, N = 3927.0932.7929.0MIN: 656.89 / MAX: 966.82MIN: 659.16 / MAX: 1095.43MIN: 659.98 / MAX: 1115.76

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Savina Reactors.IOCBA2K4K6K8K10KSE +/- 124.98, N = 12SE +/- 135.20, N = 10SE +/- 132.43, N = 310593.110556.810727.0MIN: 9808.53 / MAX: 17277.01MIN: 9686.04 / MAX: 17405.76MIN: 10534.84 / MAX: 16138.09

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Apache Spark PageRankCBA7001400210028003500SE +/- 10.59, N = 3SE +/- 44.51, N = 3SE +/- 8.01, N = 33315.63284.43264.2MIN: 3013.95 / MAX: 3538.2MIN: 2976.08 / MAX: 3487.64MIN: 2977.66 / MAX: 3407.3

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Finagle HTTP RequestsCBA14002800420056007000SE +/- 54.07, N = 3SE +/- 39.78, N = 3SE +/- 12.49, N = 36334.96355.96388.0MIN: 5889.87 / MAX: 6744.07MIN: 5962.08 / MAX: 6615.68MIN: 6014.77 / MAX: 6583.08

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: In-Memory Database ShootoutCBA13002600390052006500SE +/- 32.15, N = 3SE +/- 8.29, N = 3SE +/- 29.89, N = 35785.85806.35885.6MIN: 5366.86 / MAX: 6431.84MIN: 5340.17 / MAX: 6255.88MIN: 5435.15 / MAX: 6612.91

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Akka Unbalanced Cobwebbed TreeCBA5K10K15K20K25KSE +/- 246.85, N = 4SE +/- 94.75, N = 3SE +/- 283.78, N = 321944.121707.321301.3MIN: 17241.95 / MAX: 22531.6MIN: 17397.75 / MAX: 21876.4MIN: 16814.72 / MAX: 21736.24

OpenBenchmarking.orgms, Fewer Is BetterRenaissance 0.14Test: Genetic Algorithm Using Jenetics + FuturesCBA7001400210028003500SE +/- 8.86, N = 3SE +/- 19.65, N = 3SE +/- 36.44, N = 33312.33332.23326.4MIN: 3085.46 / MAX: 3444.45MIN: 3141.44 / MAX: 3499.93MIN: 3113.02 / MAX: 3559.11

TensorFlow Lite

This is a benchmark of the TensorFlow Lite implementation focused on TensorFlow machine learning for mobile, IoT, edge, and other cases. The current Linux support is limited to running on CPUs. This test profile is measuring the average inference time. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: SqueezeNetCBA13002600390052006500SE +/- 24.88, N = 3SE +/- 32.67, N = 3SE +/- 67.04, N = 56281.506228.146265.55

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: Inception V4CBA12K24K36K48K60KSE +/- 554.56, N = 15SE +/- 509.69, N = 15SE +/- 547.53, N = 1556976.556755.456636.8

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: NASNet MobileCBA11K22K33K44K55KSE +/- 645.08, N = 3SE +/- 752.62, N = 3SE +/- 585.17, N = 353490.253029.352320.8

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: Mobilenet FloatCBA9001800270036004500SE +/- 55.64, N = 15SE +/- 15.42, N = 3SE +/- 15.07, N = 34326.654200.794151.90

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: Mobilenet QuantCBA7001400210028003500SE +/- 9.83, N = 3SE +/- 14.03, N = 3SE +/- 32.31, N = 33162.023112.603183.52

OpenBenchmarking.orgMicroseconds, Fewer Is BetterTensorFlow Lite 2022-05-18Model: Inception ResNet V2CBA20K40K60K80K100KSE +/- 579.59, N = 3SE +/- 296.72, N = 3SE +/- 970.79, N = 386773.982936.784278.2

GROMACS

The GROMACS (GROningen MAchine for Chemical Simulations) molecular dynamics package testing with the water_GMX50 data. This test profile allows selecting between CPU and GPU-based GROMACS builds. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgNs Per Day, More Is BetterGROMACS 2022.1Implementation: MPI CPU - Input: water_GMX50_bareCBA0.82911.65822.48733.31644.1455SE +/- 0.003, N = 3SE +/- 0.004, N = 3SE +/- 0.001, N = 33.6853.6753.6751. (CXX) g++ options: -O3

A

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301039
Java Notes: OpenJDK Runtime Environment (build 11.0.15+10-Ubuntu-0ubuntu0.22.04.1)
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 19 May 2022 07:30 by user phoronix.

B

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301039
Java Notes: OpenJDK Runtime Environment (build 11.0.15+10-Ubuntu-0ubuntu0.22.04.1)
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 19 May 2022 11:26 by user phoronix.

C

Processor: AMD Ryzen Threadripper 3990X 64-Core @ 2.90GHz (64 Cores / 128 Threads), Motherboard: Gigabyte TRX40 AORUS PRO WIFI (F4p BIOS), Chipset: AMD Starship/Matisse, Memory: 128GB, Disk: Samsung SSD 970 EVO Plus 500GB, Graphics: AMD Radeon RX 5700 8GB (1750/875MHz), Audio: AMD Navi 10 HDMI Audio, Monitor: DELL P2415Q, Network: Intel I211 + Intel Wi-Fi 6 AX200

OS: Pop 22.04, Kernel: 5.17.5-76051705-generic (x86_64), Desktop: GNOME Shell 42.0, Display Server: X Server 1.21.1.3, OpenGL: 4.6 Mesa 22.0.1 (LLVM 13.0.1 DRM 3.44), Vulkan: 1.2.204, Compiler: GCC 11.2.0, File-System: ext4, Screen Resolution: 3840x2160

Kernel Notes: Transparent Huge Pages: madvise
Compiler Notes: --build=x86_64-linux-gnu --disable-vtable-verify --disable-werror --enable-bootstrap --enable-cet --enable-checking=release --enable-clocale=gnu --enable-default-pie --enable-gnu-unique-object --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,m2 --enable-libphobos-checking=release --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-link-serialization=2 --enable-multiarch --enable-multilib --enable-nls --enable-objc-gc=auto --enable-offload-targets=nvptx-none=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-11-gBFGDP/gcc-11-11.2.0/debian/tmp-gcn/usr --enable-plugin --enable-shared --enable-threads=posix --host=x86_64-linux-gnu --program-prefix=x86_64-linux-gnu- --target=x86_64-linux-gnu --with-abi=m64 --with-arch-32=i686 --with-build-config=bootstrap-lto-lean --with-default-libstdcxx-abi=new --with-gcc-major-version-only --with-multilib-list=m32,m64,mx32 --with-target-system-zlib=auto --with-tune=generic --without-cuda-driver -v
Processor Notes: Scaling Governor: acpi-cpufreq schedutil (Boost: Enabled) - CPU Microcode: 0x8301039
Java Notes: OpenJDK Runtime Environment (build 11.0.15+10-Ubuntu-0ubuntu0.22.04.1)
Security Notes: itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Retpolines IBPB: conditional STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

Testing initiated at 19 May 2022 13:58 by user phoronix.