7742-namd

2 x AMD EPYC 7742 64-Core testing with a Supermicro H12DSG-O-CPU (2.1 BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2109138-HOWE-7742NAM21
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
1
September 13 2021
  6 Minutes


7742-namdOpenBenchmarking.orgPhoronix Test Suite2 x AMD EPYC 7742 64-Core @ 2.25GHz (128 Cores / 255 Threads)Supermicro H12DSG-O-CPU (2.1 BIOS)AMD Starship/Matisse16 x 32 GB DDR4-2933MT/s 36ASF4G72PZ-2G9J3960GB INTEL SSDSC2KB96ASPEED2 x Intel I350Ubuntu 20.045.11.0-25-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.9GCC 10.3.0 + CUDA 11.2ext41024x768ProcessorMotherboardChipsetMemoryDiskGraphicsNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen Resolution7742-namd BenchmarksSystem Logs- Transparent Huge Pages: madvise- Scaling Governor: acpi-cpufreq ondemand (Boost: Enabled) - CPU Microcode: 0x830104d - itlb_multihit: Not affected + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Full AMD retpoline IBPB: conditional IBRS_FW STIBP: conditional RSB filling + srbds: Not affected + tsx_async_abort: Not affected

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms10.06390.12780.19170.25560.3195SE +/- 0.00241, N = 150.28414