6258r-namd

2 x Intel Xeon Gold 6258R testing with a Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS) and ASPEED on Ubuntu 20.04 via the Phoronix Test Suite.

Compare your own system(s) to this result file with the Phoronix Test Suite by running the command: phoronix-test-suite benchmark 2109091-HOWE-6258RNA72
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Result
Identifier
Performance Per
Dollar
Date
Run
  Test
  Duration
1
September 09 2021
  8 Minutes


6258r-namdOpenBenchmarking.orgPhoronix Test Suite2 x Intel Xeon Gold 6258R @ 4.00GHz (56 Cores / 112 Threads)Supermicro X11DPG-OT-CPU v1.01 (3.4 BIOS)Intel Sky Lake-E DMI3 Registers16 x 32 GB DDR4-2933MT/s Micron 36ASF4G72PZ-2G9E2960GB INTEL SSDSC2KB96 + 8GB USBFlashDriveASPEED9662 x Intel X722 for 10GBASE-TUbuntu 20.045.11.0-25-generic (x86_64)GNOME Shell 3.36.4X Server 1.20.9GCC 10.3.0 + CUDA 11.2ext41440x900ProcessorMotherboardChipsetMemoryDiskGraphicsMonitorNetworkOSKernelDesktopDisplay ServerCompilerFile-SystemScreen Resolution6258r-namd BenchmarksSystem Logs- Transparent Huge Pages: madvise- Scaling Governor: intel_cpufreq ondemand - CPU Microcode: 0x5003102- itlb_multihit: KVM: Mitigation of VMX disabled + l1tf: Not affected + mds: Not affected + meltdown: Not affected + spec_store_bypass: Mitigation of SSB disabled via prctl and seccomp + spectre_v1: Mitigation of usercopy/swapgs barriers and __user pointer sanitization + spectre_v2: Mitigation of Enhanced IBRS IBPB: conditional RSB filling + srbds: Not affected + tsx_async_abort: Mitigation of TSX disabled

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD was developed by the Theoretical and Computational Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign. Learn more via the OpenBenchmarking.org test page.

OpenBenchmarking.orgdays/ns, Fewer Is BetterNAMD 2.14ATPase Simulation - 327,506 Atoms10.09120.18240.27360.36480.456SE +/- 0.01373, N = 150.40529